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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 996 fasta sequence
[TCCTTTCATGCCAAGCACACACACCATCTGCATCTTCTCTTCTACCATTCTTGCTTTCTCCTTGTAGTCTCTTCTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTTCTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCTTGTCCTGGCTGTGGATGATATCCTTCCTGACAGGAAGCTCATCTATAGGCTACTCAAGACCTCTTCTTTCCAAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAGGAATCGTCTTATTTAAGGGACAT-CCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAATAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGGATACTGCTTGAATTCGAATGGGTGATTCTCAGTTCATCACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTGAGATTAAGGGCCACTGAAAACATCTTGTGCCATATTTGTTAAGGAATATCTTAAAAC]
[+] EMBL CF293858 [TCCTTTCATGCCAAGCACACACACCATCTGCATCTTCTCTTCTACCATTCTTGCTTTCTCCTTGTAGTCTCTTCTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTTCTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCTTGTCCTGGCTGTGGATGATATCCTTCCTGACAGGAAGCTCATCTATAGGCTACTCAAGACCTCTTCTTTCCAAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAGGAATCGTCTTATTTAAGGGACAT CCCAGTTGTGATCATGTCATCGGA ]
[+] EMBL AK058585 [ CATTCTTGCTTTCTCCTTGTAGTCTCTTCTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTTCTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCATGTCCTGGCTGTGGATGATAGCCTTCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAGGAATCGTCTTATTTAAGGGACAT CCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAATAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGGATACTGCTTGAATTCGAATGGGTGATTCTCAGTTCATCACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTGAGATTA ]
[-] EMBL CF293857 [ CACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTTTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAGGAATCGTCTTATTTAAGGGACATCCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAATAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGGATAaaaa ]
[-] EMBL BU673563 [ TCTCAGTTCATCACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTGAGATTAAGGGCCACTGAAAACATCTTGTGCCATATTTGTTAAGGAATATCTTAAAAC]
consensusID : consensus_7978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[CTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTTCTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCATGTCCTGGCTGTGGATGATAGCCTTCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGGTTTGGCTTTTGTTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCGAGGAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAAAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGG]
[+] EMBL AK120926 [CTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTTCTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCATGTCCTGGCTGTGGATGATAGCCTTCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGGTTTGGCTTTTGTTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCGAGGAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAAAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7978#0 TCCTTTCATGCCAAGCACACACACCATCTGCATCTTCTCTTCTACCATTCTTGCTTTCTC 60
consensus_7978#1 ------------------------------------------------------------
consensus_7978#0 CTTGTAGTCTCTTCTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTT 120
consensus_7978#1 -------------CTGTTCTTTCAGAGAAGAGAAAAACATATCTGTGCTAGCTTTGCCTT 47
***********************************************
consensus_7978#0 CTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCTTGTCCTGGCTGTGGATGATATCCTTC 180
consensus_7978#1 CTTCCATGGCAGTGGCTATAGAGGCTCCGTTCCATGTCCTGGCTGTGGATGATAGCCTTC 107
********************************* ******************** *****
consensus_7978#0 CTGACAGGAAGCTCATCTATAGGCTACTCAAGACCTCTTCTTTCCAAG------------ 228
consensus_7978#1 CTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGGTTTGGCTTTTG 167
***************** * ****************************
consensus_7978#0 ---------TTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATG 279
consensus_7978#1 TTTGTGTAGTTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATG 227
***************************************************
consensus_7978#0 ATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGA 339
consensus_7978#1 ATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGGAGGTTGCAGTGAACCTGA 287
************************************************************
consensus_7978#0 TCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAGG 399
consensus_7978#1 TCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCGAGG 347
******************************************************** ***
consensus_7978#0 AATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAA 459
consensus_7978#1 AATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAA 407
************************************************************
consensus_7978#0 GGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCT 519
consensus_7978#1 GGATCAATAGATGCCTGGAGGAAGGAGCTGATGAATTTTTCCTCAAACCAGTTCGGCTCT 467
************************************************************
consensus_7978#0 CCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGC 579
consensus_7978#1 CCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCACTACCAGC 527
************************************************************
consensus_7978#0 AGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGA 639
consensus_7978#1 AGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGA 587
************************************************************
consensus_7978#0 ACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTT 699
consensus_7978#1 ACAGCAGCAGCAGCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTT 647
************************************************************
consensus_7978#0 TGCCCCACACAATAAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACT 759
consensus_7978#1 TGCCCCACACAA-AAGACCAAGGCATAGTTGATTTAGCATCTGACTGGTCATTTGACACT 706
************ ***********************************************
consensus_7978#0 GATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATAC 819
consensus_7978#1 GATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAAAGGGATAC 766
************************************************************
consensus_7978#0 TAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGGATACTGCTTGAATTCGAATG 879
consensus_7978#1 TAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGG-------------------- 806
****************************************
consensus_7978#0 GGTGATTCTCAGTTCATCACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTG 939
consensus_7978#1 ------------------------------------------------------------
consensus_7978#0 AGATTAAGGGCCACTGAAAACATCTTGTGCCATATTTGTTAAGGAATATCTTAAAAC 996
consensus_7978#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||