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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence
[TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGCGGCGAGAGGCGGCGGGGATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTTGGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTTAGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTACAAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTGTGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAGGAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCACATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACAGCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT]
[+] EMBL AK072613 [TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGCGGCGAGAGGCGGCGGGGATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTTGGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTTAGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTACAAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTGTGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAGGAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCACATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACAGCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT]
[+] EMBL CA759930 [ GCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAA ]
[+] EMBL CA998323 [ CTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGT ]
consensusID : consensus_7986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGAGGAAGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTTTGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNNCGAAAAGAAAANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCGAGCNGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTGCCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATCCAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAAAAAAAA]
[+] EMBL AU030224 [TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGAGGAAGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTTTGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNNCGAAAAGAAAANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCGAGCNGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTGCCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATCCAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAAAAAAAA]
consensusID : consensus_7986#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence
[GAGANANAGAGGCGACATCGCGGCGGAGACCGCGGCGGGGATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGTGACGCTGGCGCTGNNACGGGGTGCNCACGCAAAGCCNCTT]
[+] EMBL AU077702 [GAGANANAGAGGCGACATCGCGGCGGAGACCGCGGCGGGGATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGTGACGCTGGCGCTGNNACGGGGTGCNCACGCAAAGCCNCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7986#0 ---------------TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGC 45
consensus_7986#2 -----------------------------------GAGANANAGAGGCGACATCGC-GGC 24
consensus_7986#1 TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGA-GGA 59
* ** * * * * **
consensus_7986#0 GGCGAGAGGCGGCGGG----GATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAG-- 99
consensus_7986#2 GGAGACCG-CGGCGGG----GATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAG-- 77
consensus_7986#1 AGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTT 119
* * * * * * * ** * * * ** * * *
consensus_7986#0 -GGGGCGCGGGTGCGGA-------ATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAG 151
consensus_7986#2 -GGGGCGCGGGTGCGGA-------ATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAG 129
consensus_7986#1 TGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNN-CGAAAAGAAA 178
* * *** * * ** * ** ** ** ** ** *** *
consensus_7986#0 CGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGAC 211
consensus_7986#2 CGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAG-TGAC 188
consensus_7986#1 ANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCG--AGCNGTGCGCATCACTGAT 236
* * *** * * ***** ** ** * ***
consensus_7986#0 GCTGGCGCT--GCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCG 269
consensus_7986#2 GCTGGCGCT--GNN-ACGGGG-TGCNC-ACGC-AAAGCCNCTT----------------- 225
consensus_7986#1 ATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTG 296
*** * ** * * * * *
consensus_7986#0 CGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCG 329
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 CCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATC 356
consensus_7986#0 CAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTC 389
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 CAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGC 416
consensus_7986#0 TTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTT 449
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 TTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTT 476
consensus_7986#0 GGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTT 509
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 TCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTT 536
consensus_7986#0 AGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTAC 569
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGG 596
consensus_7986#0 AAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTG 629
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 TTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGC 656
consensus_7986#0 TGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAG 689
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 TTCAAAAAAAA------------------------------------------------- 667
consensus_7986#0 GAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCAC 749
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 ATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAA 809
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 AACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATA 869
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 TGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAA 929
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 ATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGC 989
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 GTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTT 1049
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 GCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTAT 1109
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 GTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTT 1169
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 TCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCA 1229
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 TTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACA 1289
consensus_7986#2 ------------------------------------------------------------
consensus_7986#1 ------------------------------------------------------------
consensus_7986#0 GCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT 1337
consensus_7986#2 ------------------------------------------------
consensus_7986#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||