These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence [TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGCGGCGAGAGGCGGCGGGGATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTTGGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTTAGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTACAAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTGTGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAGGAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCACATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACAGCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT] [+] EMBL AK072613 [TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGCGGCGAGAGGCGGCGGGGATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTTGGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTTAGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTACAAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTGTGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAGGAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCACATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACAGCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT] [+] EMBL CA759930 [ GCTGGCGCGGCGGCGGCTGTACCGGGAGGTGACGCTGGCGCTGCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCGCGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCGCAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTCTTTCAGAACTCATTGCATCAACCAA ] [+] EMBL CA998323 [ CTAATTGGGCATGTTTATGCGAAAGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGCGTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGT ] consensusID : consensus_7986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGAGGAAGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTTTGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNNCGAAAAGAAAANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCGAGCNGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTGCCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATCCAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAAAAAAAA] [+] EMBL AU030224 [TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGAGGAAGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTTTGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNNCGAAAAGAAAANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCGAGCNGTGCGCATCACTGATATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTGCCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATCCAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAAAAAAAA] consensusID : consensus_7986#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [GAGANANAGAGGCGACATCGCGGCGGAGACCGCGGCGGGGATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGTGACGCTGGCGCTGNNACGGGGTGCNCACGCAAAGCCNCTT] [+] EMBL AU077702 [GAGANANAGAGGCGACATCGCGGCGGAGACCGCGGCGGGGATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAGGGGGCGCGGGTGCGGAATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAGCGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGTGACGCTGGCGCTGNNACGGGGTGCNCACGCAAAGCCNCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7986#0 ---------------TAGAGAAGAGAGAGAAGAGAGAGAGAGAGAGGCGACATCGCCGGC 45 consensus_7986#2 -----------------------------------GAGANANAGAGGCGACATCGC-GGC 24 consensus_7986#1 TTCCCCCCCCCAAATTCNGGCTTGGNTTTCCGAGGAAATTNCAGNTGGNNCTTTGA-GGA 59 * ** * * * * ** consensus_7986#0 GGCGAGAGGCGGCGGG----GATGAGCCGGAAGGAGGTGGTGGTGGCGGCGGCTGGAG-- 99 consensus_7986#2 GGAGACCG-CGGCGGG----GATGAGCCGGAAAGAGGTGGTGGTGGCGGCGGCTNNAG-- 77 consensus_7986#1 AGNNTTTNCCAGAGNCTTTTNAAAGGNTGTGCAAAGTTAGACGNNGCCCCCATTANGGTT 119 * * * * * * * ** * * * ** * * * consensus_7986#0 -GGGGCGCGGGTGCGGA-------ATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAG 151 consensus_7986#2 -GGGGCGCGGGTGCGGA-------ATCGGGAGCGGAGGGATCTTCATCTGCGGGAAGCAG 129 consensus_7986#1 TGAAATGTGGGGGAGTTCCCTACTATTNCTAAATTGGGCATNTTTATNN-CGAAAAGAAA 178 * * *** * * ** * ** ** ** ** ** *** * consensus_7986#0 CGGCGGCGGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAGGTGAC 211 consensus_7986#2 CGGCGGCNGCGGGGAGCTCGCGGAGGCGCTGGCGCGGCGGCGGCTGTACCGGGAG-TGAC 188 consensus_7986#1 ANTCTCCCATACACGAACAANTGAGANTTTTGTTCGGCG--AGCNGTGCGCATCACTGAT 236 * * *** * * ***** ** ** * *** consensus_7986#0 GCTGGCGCT--GCGCACGGGGCTGCGCGACGCCAAGGCCGACTTCTCCTTCCTCCGCGCG 269 consensus_7986#2 GCTGGCGCT--GNN-ACGGGG-TGCNC-ACGC-AAAGCCNCTT----------------- 225 consensus_7986#1 ATGGGCAGCAAGTCGGTTTGGCTCCCACTCNNNGACGTGGANCAGAGGCAGATGNCCTTG 296 *** * ** * * * * * consensus_7986#0 CGGGGGCTCCGCAGCCTCCTCGGCTTCCTCCGCTCCACCGCCTCCGCCACCGACGACTCG 329 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 CCAAATACAAGCAAGGAGAGTTGTTGAANCCTTGGAGCCCNTACTAAGACAAAGCACATC 356 consensus_7986#0 CAGCTGCTCCTCTTCCGGCATTCCCAGTCTATCCCCGATCTCCAAGTTATTCCTGTTCTC 389 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 CAATGCGTTCCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGC 416 consensus_7986#0 TTTCAGAACTCATTGCATCAACCAAAGGAAGATCCTGTTGTGACCTTGGATCATATATTT 449 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 TTCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTT 476 consensus_7986#0 GGAGTAGAACCAATGAAGATTACAAGCCCCCCAACAGATAATGAAATTGCTCTCGCTCTT 509 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 TCTGTATGTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTT 536 consensus_7986#0 AGAGTCTTGGAAGGATGTTGCCTTTTGTATAGCCGATGCACTGCTCTGGCACACAAGTAC 569 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGG 596 consensus_7986#0 AAGGCTGTGAAGGTAATCCTGAATATATTAGCTAACCGAGGTCCAGCTGAGCAAGGAGTG 629 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 TTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGC 656 consensus_7986#0 TGCTTGGACGCGCTGATATCGTTGATGTTGGATTCACCCCCCAATCAGATGGATTTCGAG 689 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 TTCAAAAAAAA------------------------------------------------- 667 consensus_7986#0 GAATTCAGTGGACTTGAGAAGGTTGCAGAGCTTTTAAAGGATGTGCAAGTAGAAGAGCAC 749 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 ATAAGATTGAAATGTGGGGAGTTCCTACTATTGCTAATTGGGCATGTTTATGCGAAAGAA 809 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 AACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATA 869 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 TGGGCAGCAAGTCGGTTTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAA 929 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 ATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCCTACTAAGACAAAGCACATCAATGC 989 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 GTTCTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCTTCATTT 1049 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 GCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTAT 1109 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 GTACAAACTTTGTTGAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTT 1169 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 TCCATTCGAAAACCATGGACTAGGTTACGGTGGTAACTTAGGGCTTGTAGTGGTTCCCCA 1229 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 TTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATGCTTCAACA 1289 consensus_7986#2 ------------------------------------------------------------ consensus_7986#1 ------------------------------------------------------------ consensus_7986#0 GCAATATTGGCAACAGTTTCATTGAAACAGAGGAAATCCCCTCCAATT 1337 consensus_7986#2 ------------------------------------------------ consensus_7986#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||