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Oryza sativa
cluster # 7990 cluster # 7990       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7990#0 length = 699 sequences # 5  

consensusID : consensus_7990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 699
fasta sequence
                              [CCAACCCAACCCCTCCTCATCTCGCATCGCAAGCCGCCGCCGCGGATGGAAGGCCTCATCCCG-CTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCGCCCCGACGGCGGCGCCGCCGCCGGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGGTCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCAGCAGCAGCCGCACCGGCGGAACCTGTCGCTGGAGGAGCTGGCCGGCGAGGTGGGGCTCTCCCCTGGCCGGCGGCTGCCGCGGGTAGCGCTCCCCAAGGCCCGCAGCGTCCGCGTCTTCTCCTGCATCGGCGCCGGCGCCGGAGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGCGAAACCTGTGAATACATACACCTGACCTGGTGGCCGCCATGATCATCAGTTCATCGCTGGAGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTGTTTTTAATTAGTTCTCTCTCCCTCTTTTTTTTTCT-TTGTTTGGATCTGGTAGAAATGATTCGTATGTGGTGGTGTTAGTAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACGGCAGATTTTGAACTTTGTTCTGCCTCTCG]

[+] EMBL AK068601             [CCAACCCAACCCCTCCTCATCTCGCATCGCAAGCCGCCGCCGCGGATGGAAGGCCTCATCCCG CTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCGCCCCGACGGCGGCGCCGCCGCCGGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGGTCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCAGCAGCAGCCGCACCGGCGGAACCTGTCGCTGGAGGAGCTGGCCGGCGAGGTGGGGCTCTCCCCTGGCCGGCGGCTGCCGCGGGTAGCGCTCCCCAAGGCCCGCAGCGTCCGCGTCTTCTCCTGCATCGGCGCCGGCGCCGGAGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGCGAAACCTGTGAATACATACACCTGACCTGGTGGCCGCCATGATCATCAGTTCATCGCTGGAGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTGTTTTTAATTAGTTCTCTCTCCCTCTTTTTTTTTTTCTTGTTTGGATCTGGTAGAAATGATTCGTATGTGGTGGTGTTAGTAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACG                             ]
[+] EMBL OSR26091A            [                        CATCGCAAGCCGCCGCCGCGNATGGAAGGCCTCATCCCG CTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCG CCCGACGGCGGCGCCGCCG  NGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGGTCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB664170             [                                            GATGGAAGGCCTCATCCCG CTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCGCCCCGACGGCGGCGCCGCCGCCGGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGGTCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCAGCAGCAGCCGCACCGGCGGAACCTGTCGCTGGAGGAGCTGGCCGGCGAGGTGGGGCTCTCCCCTGGCCGGCGGCTGCCGCGGGTAGCGCTCCCCAAGGCCCGCAGCGTCCGCGTCTTCTCCTGCATCGGCGCCGGCGCCGGAGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGCGAAACCTGTGAATACATACCCCTGACCTGGTGGCCGCCATGATCATCAGTTCATCGCTGGAGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTGTTTTTAATTAGTTCTCTCTCCCTCTTTTTTTTTCT TTGTTTGGATCTGGTAGAAATGATTCGTATGTGGTGGTGTTAGTAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACGGCAGATTTTGAACTTTGTTCTGCCTCTCG]
[+] EMBL CB664169             [                                                    GCCTCATCCCGNCTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCGCCCCGACGGCGGCGCCGCCGCCGGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGGTCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCAGCAGCAGCCGCACCGGCGGAACCTGTCGCTGGAGGAGCTGGCCGGCGAGGTGGGGCTCTCCCCTGGCCGGCGGCTGCCGCGGGTAGCGCTCCCCAAGGCCCGCAGCGTCCGCGTCTTCTCCTGCATCGGCGCCGGCGCCGGAGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGCGAAACCTGTGAATACATACACCTGACCTGGTGGCCGCCATGATCATCAGTTCATCGCTGGAGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTGTTTTTAATTAGTTCTCTCTCCCTCTTTTTTTTTCT TTGTTTGGATCTGGTAGAAATGATTCCTATGTGGTGGTGTTAGCAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACGGCAG                         ]
[+] EMBL AU095477             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGATTCGTATGTGGTGGTGTTAGTAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACGGCAGATTTTGAAaaaaa            ]


>consensus_7990#0 CCAACCCAACCCCTCCTCATCTCGCATCGCAAGCCGCCGCCGCGGATGGAAGGCCTCATC CCGCTTCTCTACAAGGCCATCAAGGATCGCCGGGGCGGCCGCCCCGACGGCGGCGCCGCC GCCGGCGTGGACCTCTACGACCCGGAGCAGCGCCGGCTGTGGCTGGAGCAGGAGGTGCGG TCCCCGCTCCACCCATCGGCCGCGGCGGCGGGGGGCCAGCACCAGCAGCAGCAGCAGCCG CACCGGCGGAACCTGTCGCTGGAGGAGCTGGCCGGCGAGGTGGGGCTCTCCCCTGGCCGG CGGCTGCCGCGGGTAGCGCTCCCCAAGGCCCGCAGCGTCCGCGTCTTCTCCTGCATCGGC GCCGGCGCCGGAGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGC GAAACCTGTGAATACATACACCTGACCTGGTGGCCGCCATGATCATCAGTTCATCGCTGG AGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTGTTTTTAATT AGTTCTCTCTCCCTCTTTTTTTTTCTTTGTTTGGATCTGGTAGAAATGATTCGTATGTGG TGGTGTTAGTAGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTT GTTATACACGGCAGATTTTGAACTTTGTTCTGCCTCTCG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)