cluster # 7991

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Oryza sativa
cluster # 7991 cluster # 7991 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7991#0 length = 436 sequences # 2

consensus_7991#1 length = 429 sequences # 3

consensusID : consensus_7991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence

                              [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGC-AATTNGGTTT-CATGAATTGGGGAAACCGGCCGAAAAACCG]

[+] EMBL AU058374             [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGC AATTNGGTTT CATGAATTGGGGAAACCGGCCGAAAAACCG]
[+] EMBL AU065642             [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAAC ACATGCNATTTTGGTTTGCATGAATTGNGGAAt               ]




>consensus_7991#0
GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCC
GTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGC
AGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGG
AGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTC
TAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTAT
AGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATC
TTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGCAATTNGGTTTCATGAATTGGGGAA
ACCGGCCGAAAAACCG

consensusID : consensus_7991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 429
fasta sequence

                              [CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAAAAAAAAAA]

[+] EMBL AU056285             [CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU101477             [                                    TGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGANCCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAAA       ]
[+] EMBL AU030201             [                                                       GGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGANTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTANCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAna       ]




>consensus_7991#1
CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGC
CCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCG
AAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGG
CGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGA
GAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGAT
TTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTG
TACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7991#0      GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCC 60
consensus_7991#1      ------------------------------------------------------------
                                                                                  

consensus_7991#0      GTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGC 120
consensus_7991#1      ---------------------CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGC 39
                                           ***************************************

consensus_7991#0      AGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGG 180
consensus_7991#1      AGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGG 99
                      ************************************************************

consensus_7991#0      AGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTC 240
consensus_7991#1      AGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTC 159
                      ************************************************************

consensus_7991#0      TAGCAAGCGGCAACN-TGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTA 299
consensus_7991#1      TAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTA 219
                      **************  ********************************************

consensus_7991#0      TAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAAT 359
consensus_7991#1      TAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAAT 279
                      ************************************************************

consensus_7991#0      CTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGCAATTNGGTTT-CATGAATTGGGG 418
consensus_7991#1      CTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTG 339
                      ****** * ******** *********************** ***** **** ***** *

consensus_7991#0      AAACCG-GCCGAAAAACCG----------------------------------------- 436
consensus_7991#1      TAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGAT 399
                       ** ** * ** * *  **                                         

consensus_7991#0      ------------------------------
consensus_7991#1      TTTTCAGAGCTGCAAAAAAAAAAAAAAAAA 429