These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGC-AATTNGGTTT-CATGAATTGGGGAAACCGGCCGAAAAACCG] [+] EMBL AU058374 [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGC AATTNGGTTT CATGAATTGGGGAAACCGGCCGAAAAACCG] [+] EMBL AU065642 [GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCCGTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACNTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAAC ACATGCNATTTTGGTTTGCATGAATTGNGGAAt ] consensusID : consensus_7991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 429 fasta sequence [CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAAAAAAAAAA] [+] EMBL AU056285 [CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101477 [ TGCAGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGANCCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAAA ] [+] EMBL AU030201 [ GGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGANTAGGAGCAGCAGCTGAACTTTGTCGAAGCTATTANCCAAGACGAACCTTTTTAACCGTCCATTCTAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTATAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAATCTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTGTAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGATTTTTCAGAGCTGCAAAAAAAAna ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7991#0 GAGGGGCTCCGTGACTGCGAGGGGTGGCCGTTCGGGCTGTGCCGCCTCCCCGGCCCCGCC 60 consensus_7991#1 ------------------------------------------------------------ consensus_7991#0 GTCCTGCCGCTGCCGCCGCTGCCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGC 120 consensus_7991#1 ---------------------CCCAGCACGCCGGCCGACTCGTGGCAGTGGCGCAAGTGC 39 *************************************** consensus_7991#0 AGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGG 180 consensus_7991#1 AGCAGCAACCTCGCCGGGAGCCCGGCTCCAGCTTACAGTTACAAGACTACTCCGAGTAGG 99 ************************************************************ consensus_7991#0 AGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTC 240 consensus_7991#1 AGCAGCAGCTGAACTTTGTCGAAGCTATTAGCCAAGACGAACCTTTTTAACCGTCCATTC 159 ************************************************************ consensus_7991#0 TAGCAAGCGGCAACN-TGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTA 299 consensus_7991#1 TAGCAAGCGGCAACGCTGCGGCGGGCATGCGACGATGAATGCGAGATTTTCACTCAGGTA 219 ************** ******************************************** consensus_7991#0 TAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAAT 359 consensus_7991#1 TAGTTAACCTCGTTGTGTGGAGAGATCGATATGATGATGTGAGAGTGTGCTTCTTGTAAT 279 ************************************************************ consensus_7991#0 CTTGTTNGGTTCCGTTTNGATTTTTGGAACAACATGCAATTNGGTTT-CATGAATTGGGG 418 consensus_7991#1 CTTGTTGGTTTCCGTTTGGATTTTTGGAACAACATGCAATTTGGTTTGCATGTATTGGTG 339 ****** * ******** *********************** ***** **** ***** * consensus_7991#0 AAACCG-GCCGAAAAACCG----------------------------------------- 436 consensus_7991#1 TAATCGTGTCGTATACTCGTGTACTCCTGTGTGCTGAATAACTCGGATGAACCTTGAGAT 399 ** ** * ** * * ** consensus_7991#0 ------------------------------ consensus_7991#1 TTTTCAGAGCTGCAAAAAAAAAAAAAAAAA 429 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||