Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7992 cluster # 7992       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7992#0 length = 3096 sequences # 3  
consensus_7992#1 length = 437 sequences # 1  
consensus_7992#2 length = 349 sequences # 1  

consensusID : consensus_7992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3096
fasta sequence
                              [TCCATTCTCCTCCTCTGTCCTCTTCTCCATGGGAAACTGTGATGAGGCCACAAAAAAGAATGTTCTTGTATGCCCCCTGCCATAAACATTCCTAGGACCACATCCGCACCCAAAGACCCAAACAAACCCAAGAACCACCCCCCTGTTTCGGCCTGCACTTCACTTTACTCTCTCTCTCTCCCAGTTCTTCTACCACTGCAGGAGCAGGGATTGCTGGTTTCTTGGGTTGATTCTTTGGTTGGTGGTTTCTTCTCTTGGAGTTCTGATTTGGGGGGCTCGAGTTCCTGTCTCAAAGTTTCGATTTTGGGGGGGTTCTTGGGGGTGTCGGTGTTGATGGTTTAGCGAGGGATTTTTCTGTTGGGGGGTTTAGGTTGGTGTAGATCAGAGTTTTTTTTGGCTTCGAAAGGCATCTGCTTTCCTTGCGTGGGTGTGGGAATTTCAGGAGTTTTGGGAGGATTTGTTTTTCCTTTTGGGGGTTGAAGTAATCTCTTGTTCTGTAGATGTGCAACTTCGTCTGGCTGCTCCGTGTAATCTGCACGATCTTCAGCTTCGCCCTCTGATGGTATTCAGTCCGTGTTCTTCACTTTGGCGATTTTAGAGTGGATTGAGTTTTTTTTCCCTCGGGGGAAAGTGGTGTTCTTGTTACTTTTTTCTCAATTTCCTTATTAGGGTTTGGTGTAAGAGTGTGTGGAAAGCTCGAACCATTCAGCCTTTGATCTGAAGAAACTCTGGTGGGCTGGTGGTTCATTGATGTAGTGGTATCCATCGTCCTGACCATTTTGGAGGAGCTCCACCATGGCCTGCCTGAAGCTAGGATCAAGAGCTGATGTCTTCAGAAAGCAAGGACAAGACTGGTATTGCACAACCGGTCTTCCTAGTGATATAACCGTCACAGTGGGGGAGCAATCTTTTCATCTTCACAAGTTTCCTCTATTATCAAAGAGTGGCCTTTTGGAGCGTTGTATCCGAGAGAAGATTGAGAATGGAGACCACAGTTGTGTCATTGACCTATCGGATATTCCTGGGGGAGCAAAGGCTTTGGAACTAACTGCTAAGTTCTGCTATGGTGTTAAGTTCGAAATGACTGCCTCCAATGTTGTGCATCTTCGCTGTGCTGCTGAATATCTCGAGATGACTGAAGAGATTGCTGAGGGGAATTTGATTGCGCAGACAGAGAACTTCCTTACCCCAACCGTCCTTAGGAGTTGGAAAGATTCAATCAAGGCCCTCCATACCTGTGATGACATCATTGATCTTGCTGAAAAATTGCAAATCGTAAAGAGGTGCATCGACTCAGTTGCAACTAGATCATGTACTGATCCTGATTTATTTGGGTGGCCAGTTGTCCAGTACGGAGGCCCCATGCAGAGTCCAGGAGGAAGCGTCTTGTGGAATGGCATTAGCACCGGAGCAAGGCCAAGACATAGCAGCCCTGATTGGTGGTATGATGATGTTTCATGCTTAAGCCTTCCATTATACAAAAAAGTAATCTCAGCTATGGAATACCGAGGAATCAATCAGGATATTATTGTTGGATCCTTGAACCACTATGCCAAAAGGCGTTTACCTGGCCTGAATCGGCGTAAAAGCATCAGTGATGTCAGCAGTTGCCTTTCAATATCATCTTTAACATCAATCCCTTCTGAAGAGGAACAAAAGTACCTACTTGAGGAAATTGATAGACTGTTACCTTTCCAAAGGGGGGTCACATCTTGCAAGCTGTTATTTGGTCTTCTGCGGACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGTATGCAGCTTGATAAGGCTACCCTGGAAGATCTTCTGATTCCAAACATCTCTGAGTCTGTTGAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGATCAAGAAACTGGTGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCATCACTTATGCCTATAACAATGGTCGCTAAGTTGAT-TGATG-GCTACCTAGC-TGAAGTTGCACCAGATGTCAACCTAAAGCTGCCAAAGTTTCGGTCTTTGGCTGCTGCTATACCAGATTATGCCCGGCCAATAGATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCTCACCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCTCTCGAGGCCTGCACTCACGCGGCTCAGAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAGGTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCCGAGAACCTCGAAGGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAATACCGCCCCGGCTGGCCCCTGGCCTCCCGGGAGAACCAGGCCCTCCGGGAGGGCATGGACAACATGAAGCAGCGCGTCGCCGACCTGGAGAAGGAGTGCTCCACCATGAGGGATGAGATCGAGCGGCTGGGCCGCAGCCGGAGCACCGGCAAGGGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTGTCCATAGAAGCATGATGATGATGATCCGCTGATCACTCACACTACCAATCCTTTTCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTTGCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCATCCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTGCTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATATCTGTTGGAATTTGGATCACATCTCATTGGATTGTTTCTTCTGTGCGTCGACAGTAGATAAATCGGCACGTTTGGTTCTTTGCCAATCCTAACATTATC]

[+] EMBL AK100956             [TCCATTCTCCTCCTCTGTCCTCTTCTCCATGGGAAACTGTGATGAGGCCACAAAAAAGAATGTTCTTGTATGCCCCCTGCCATAAACATTCCTAGGACCACATCCGCACCCAAAGACCCAAACAAACCCAAGAACCACCCCCCTGTTTCGGCCTGCACTTCACTTTACTCTCTCTCTCTCCCAGTTCTTCTACCACTGCAGGAGCAGGGATTGCTGGTTTCTTGGGTTGATTCTTTGGTTGGTGGTTTCTTCTCTTGGAGTTCTGATTTGGGGGGCTCGAGTTCCTGTCTCAAAGTTTCGATTTTGGGGGGGTTCTTGGGGGTGTCGGTGTTGATGGTTTAGCGAGGGATTTTTCTGTTGGGGGGTTTAGGTTGGTGTAGATCAGAGTTTTTTTTGGCTTCGAAAGGCATCTGCTTTCCTTGCGTGGGTGTGGGAATTTCAGGAGTTTTGGGAGGATTTGTTTTTCCTTTTGGGGGTTGAAGTAATCTCTTGTTCTGTAGATGTGCAACTTCGTCTGGCTGCTCCGTGTAATCTGCACGATCTTCAGCTTCGCCCTCTGATGGTATTCAGTCCGTGTTCTTCACTTTGGCGATTTTAGAGTGGATTGAGTTTTTTTTCCCTCGGGGGAAAGTGGTGTTCTTGTTACTTTTTTCTCAATTTCCTTATTAGGGTTTGGTGTAAGAGTGTGTGGAAAGCTCGAACCATTCAGCCTTTGATCTGAAGAAACTCTGGTGGGCTGGTGGTTCATTGATGTAGTGGTATCCATCGTCCTGACCATTTTGGAGGAGCTCCACCATGGCCTGCCTGAAGCTAGGATCAAGAGCTGATGTCTTCAGAAAGCAAGGACAAGACTGGTATTGCACAACCGGTCTTCCTAGTGATATAACCGTCACAGTGGGGGAGCAATCTTTTCATCTTCACAAGTTTCCTCTATTATCAAAGAGTGGCCTTTTGGAGCGTTGTATCCGAGAGAAGATTGAGAATGGAGACCACAGTTGTGTCATTGACCTATCGGATATTCCTGGGGGAGCAAAGGCTTTGGAACTAACTGCTAAGTTCTGCTATGGTGTTAAGTTCGAAATGACTGCCTCCAATGTTGTGCATCTTCGCTGTGCTGCTGAATATCTCGAGATGACTGAAGAGATTGCTGAGGGGAATTTGATTGCGCAGACAGAGAACTTCCTTACCCCAACCGTCCTTAGGAGTTGGAAAGATTCAATCAAGGCCCTCCATACCTGTGATGACATCATTGATCTTGCTGAAAAATTGCAAATCGTAAAGAGGTGCATCGACTCAGTTGCAACTAGATCATGTACTGATCCTGATTTATTTGGGTGGCCAGTTGTCCAGTACGGAGGCCCCATGCAGAGTCCAGGAGGAAGCGTCTTGTGGAATGGCATTAGCACCGGAGCAAGGCCAAGACATAGCAGCCCTGATTGGTGGTATGATGATGTTTCATGCTTAAGCCTTCCATTATACAAAAAAGTAATCTCAGCTATGGAATACCGAGGAATCAATCAGGATATTATTGTTGGATCCTTGAACCACTATGCCAAAAGGCGTTTACCTGGCCTGAATCGGCGTAAAAGCATCAGTGATGTCAGCAGTTGCCTTTCAATATCATCTTTAACATCAATCCCTTCTGAAGAGGAACAAAAGTACCTACTTGAGGAAATTGATAGACTGTTACCTTTCCAAAGGGGGGTCACATCTTGCAAGCTGTTATTTGGTCTTCTGCGGACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGTATGCAGCTTGATAAGGCTACCCTGGAAGATCTTCTGATTCCAAACATCTCTGAGTCTGTTGAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGATCAAGAAACTGGTGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCATCACTTATGCCTATAACAATGGTCGCTAAGTTGAT TGATG GCTACCTAGC TGAAGTTGCACCAGATGTCAACCTAAAGCTGCCAAAGTTTCGGTCTTTGGCTGCTGCTATACCAGATTATGCCCGGCCAATAGATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCTCACCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCTCTCGAGGCCTGCACTCACGCGGCTCAGAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAGGTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCCGAGAACCTCGAAGGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAATACCGCCCCGGCTGGCCCCTGGCCTCCCGGGAGAACCAGGCCCTCCGGGAGGGCATGGACAACATGAAGCAGCGCGTCGCCGACCTGGAGAAGGAGTGCTCCACCATGAGGGATGAGATCGAGCGGCTGGGCCGCAGCCGGAGCACCGGCAAGGGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTGTCCATAGAAGCATGATGATGATGATCCGCTGATCACTCACACTACCAATCCTTTTCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTTGCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCATCCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTGCTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATATCTGTTGGAATTTGGATCACATCTCATTGGATTGTTTCTTCTGTGCGTCGACAGTAGATAAATCGGCACGTTTGGTTCTTTGCCAATCCTAACATTATC]
[+] EMBL CB662714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCAAAGGGGGGTCACATCTCGCAAGCCGTTATTCGGTCTTCTGCGGACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGTATGCAGCTTGATAAGGCTACCCTGGAAGATCTTCTGATTCCAAACATCTCTGAGTCTGTTGAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGATCAAGAAACTGGTGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCATCACTTATGCCTATAACAATGGTCGCTAAGTTGAT TGATG GCTACCTAGC TGAAGTTGCACCAGATGTCAACCTAAAGCTGCCAAAGTTTCGGTCTTTGGCTGCTGCTATACCAGATTATGCCCGGCCAATAGATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCTCACCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCTCTCGAGGCCTGCACTCACGCGGCTCAGAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAGGTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCCGAGAACCTCGAAGGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB662715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cccccGGGGGGTCACATCTTGCGAGCTGTTATTTGGTCTTCTGCGGACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGTATGCAGCTTGATAAAGCTACCCTGGAAGATCTTCTGATTCCGAACGTCTCTGAGTCTGTTGAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGATCAAGAAACTGGGGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCATCACTTATGCCTATAACAATGGCCCCTAAGTTGATCTGATGCGCTACCTATCATGAAGTTGCACCAAATGTCAACCTAAAGCTGCCAAAGTGTCGGCCTTTGGCTGCTGCTATACCAGATTATGCCCGGCCAATATATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCTCGCCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCTCTCGAGGCCTGCACTCACGCGGCTCATAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAAGTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCCGAGAACCTCGAATGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_7992#0 TCCATTCTCCTCCTCTGTCCTCTTCTCCATGGGAAACTGTGATGAGGCCACAAAAAAGAA TGTTCTTGTATGCCCCCTGCCATAAACATTCCTAGGACCACATCCGCACCCAAAGACCCA AACAAACCCAAGAACCACCCCCCTGTTTCGGCCTGCACTTCACTTTACTCTCTCTCTCTC CCAGTTCTTCTACCACTGCAGGAGCAGGGATTGCTGGTTTCTTGGGTTGATTCTTTGGTT GGTGGTTTCTTCTCTTGGAGTTCTGATTTGGGGGGCTCGAGTTCCTGTCTCAAAGTTTCG ATTTTGGGGGGGTTCTTGGGGGTGTCGGTGTTGATGGTTTAGCGAGGGATTTTTCTGTTG GGGGGTTTAGGTTGGTGTAGATCAGAGTTTTTTTTGGCTTCGAAAGGCATCTGCTTTCCT TGCGTGGGTGTGGGAATTTCAGGAGTTTTGGGAGGATTTGTTTTTCCTTTTGGGGGTTGA AGTAATCTCTTGTTCTGTAGATGTGCAACTTCGTCTGGCTGCTCCGTGTAATCTGCACGA TCTTCAGCTTCGCCCTCTGATGGTATTCAGTCCGTGTTCTTCACTTTGGCGATTTTAGAG TGGATTGAGTTTTTTTTCCCTCGGGGGAAAGTGGTGTTCTTGTTACTTTTTTCTCAATTT CCTTATTAGGGTTTGGTGTAAGAGTGTGTGGAAAGCTCGAACCATTCAGCCTTTGATCTG AAGAAACTCTGGTGGGCTGGTGGTTCATTGATGTAGTGGTATCCATCGTCCTGACCATTT TGGAGGAGCTCCACCATGGCCTGCCTGAAGCTAGGATCAAGAGCTGATGTCTTCAGAAAG CAAGGACAAGACTGGTATTGCACAACCGGTCTTCCTAGTGATATAACCGTCACAGTGGGG GAGCAATCTTTTCATCTTCACAAGTTTCCTCTATTATCAAAGAGTGGCCTTTTGGAGCGT TGTATCCGAGAGAAGATTGAGAATGGAGACCACAGTTGTGTCATTGACCTATCGGATATT CCTGGGGGAGCAAAGGCTTTGGAACTAACTGCTAAGTTCTGCTATGGTGTTAAGTTCGAA ATGACTGCCTCCAATGTTGTGCATCTTCGCTGTGCTGCTGAATATCTCGAGATGACTGAA GAGATTGCTGAGGGGAATTTGATTGCGCAGACAGAGAACTTCCTTACCCCAACCGTCCTT AGGAGTTGGAAAGATTCAATCAAGGCCCTCCATACCTGTGATGACATCATTGATCTTGCT GAAAAATTGCAAATCGTAAAGAGGTGCATCGACTCAGTTGCAACTAGATCATGTACTGAT CCTGATTTATTTGGGTGGCCAGTTGTCCAGTACGGAGGCCCCATGCAGAGTCCAGGAGGA AGCGTCTTGTGGAATGGCATTAGCACCGGAGCAAGGCCAAGACATAGCAGCCCTGATTGG TGGTATGATGATGTTTCATGCTTAAGCCTTCCATTATACAAAAAAGTAATCTCAGCTATG GAATACCGAGGAATCAATCAGGATATTATTGTTGGATCCTTGAACCACTATGCCAAAAGG CGTTTACCTGGCCTGAATCGGCGTAAAAGCATCAGTGATGTCAGCAGTTGCCTTTCAATA TCATCTTTAACATCAATCCCTTCTGAAGAGGAACAAAAGTACCTACTTGAGGAAATTGAT AGACTGTTACCTTTCCAAAGGGGGGTCACATCTTGCAAGCTGTTATTTGGTCTTCTGCGG ACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGT ATGCAGCTTGATAAGGCTACCCTGGAAGATCTTCTGATTCCAAACATCTCTGAGTCTGTT GAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGAT CAAGAAACTGGTGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCA TCACTTATGCCTATAACAATGGTCGCTAAGTTGATTGATGGCTACCTAGCTGAAGTTGCA CCAGATGTCAACCTAAAGCTGCCAAAGTTTCGGTCTTTGGCTGCTGCTATACCAGATTAT GCCCGGCCAATAGATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCT CACCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCT CTCGAGGCCTGCACTCACGCGGCTCAGAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAG GTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCC GAGAACCTCGAAGGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAATACCGC CCCGGCTGGCCCCTGGCCTCCCGGGAGAACCAGGCCCTCCGGGAGGGCATGGACAACATG AAGCAGCGCGTCGCCGACCTGGAGAAGGAGTGCTCCACCATGAGGGATGAGATCGAGCGG CTGGGCCGCAGCCGGAGCACCGGCAAGGGCAGATTCTCCCTCAACATGAAACCACAGATT TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAG AAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAG AAGCTGTCCATAGAAGCATGATGATGATGATCCGCTGATCACTCACACTACCAATCCTTT TCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTT GCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCAT CCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTG CTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATATCT GTTGGAATTTGGATCACATCTCATTGGATTGTTTCTTCTGTGCGTCGACAGTAGATAAAT CGGCACGTTTGGTTCTTTGCCAATCCTAACATTATC



consensusID : consensus_7992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTGTCCATAGAAGCATGATGATGATGATCCGNTGATCACTCACACTACCAATCCTTTTCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTTGCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCATCCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTGCTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU076283             [TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTGTCCATAGAAGCATGATGATGATGATCCGNTGATCACTCACACTACCAATCCTTTTCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTTGCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCATCCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTGCTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATAAAAAAAAAAAAAAAAAAAAA]


>consensus_7992#1 TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAG AAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAG AAGCTGTCCATAGAAGCATGATGATGATGATCCGNTGATCACTCACACTACCAATCCTTT TCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTT GCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCAT CCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTG CTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATAAAA AAAAAAAAAAAAAAAAA



consensusID : consensus_7992#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [CAGCCCGGAGGCACCGAAGGGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCACCAAGGAGGCTATTCCAACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTAAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTKTCATAGAAGCTTGATGATGATGATCCGCTGATCACTCACACTACGATCCTTTTNACTTTTCTCTCTCTGAATTCTGATATCGAGTGCATCAGTCAGTAGATGTGTTGCCGTGTTGGTGTCGTACTGCAACTAGTGAGTTGTGGTAGAGTGTTTTCTCTCTCCTTCGCGGGG]

[+] EMBL OS38007              [CAGCCCGGAGGCACCGAAGGGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCACCAAGGAGGCTATTCCAACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGCCGTGGTAAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTKTCATAGAAGCTTGATGATGATGATCCGCTGATCACTCACACTACGATCCTTTTNACTTTTCTCTCTCTGAATTCTGATATCGAGTGCATCAGTCAGTAGATGTGTTGCCGTGTTGGTGTCGTACTGCAACTAGTGAGTTGTGGTAGAGTGTTTTCTCTCTCCTTCGCGGGG]


>consensus_7992#2 CAGCCCGGAGGCACCGAAGGGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCAC CAAGGAGGCTATTCCAACGACAGCGACGACAACGGCGACGGCGAGCGAGGAGAAGATGGC CGTGGTAAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTKTC ATAGAAGCTTGATGATGATGATCCGCTGATCACTCACACTACGATCCTTTTNACTTTTCT CTCTCTGAATTCTGATATCGAGTGCATCAGTCAGTAGATGTGTTGCCGTGTTGGTGTCGT ACTGCAACTAGTGAGTTGTGGTAGAGTGTTTTCTCTCTCCTTCGCGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7992#0      TCCATTCTCCTCCTCTGTCCTCTTCTCCATGGGAAACTGTGATGAGGCCACAAAAAAGAA 60
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGTTCTTGTATGCCCCCTGCCATAAACATTCCTAGGACCACATCCGCACCCAAAGACCCA 120
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AACAAACCCAAGAACCACCCCCCTGTTTCGGCCTGCACTTCACTTTACTCTCTCTCTCTC 180
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCAGTTCTTCTACCACTGCAGGAGCAGGGATTGCTGGTTTCTTGGGTTGATTCTTTGGTT 240
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GGTGGTTTCTTCTCTTGGAGTTCTGATTTGGGGGGCTCGAGTTCCTGTCTCAAAGTTTCG 300
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      ATTTTGGGGGGGTTCTTGGGGGTGTCGGTGTTGATGGTTTAGCGAGGGATTTTTCTGTTG 360
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GGGGGTTTAGGTTGGTGTAGATCAGAGTTTTTTTTGGCTTCGAAAGGCATCTGCTTTCCT 420
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGCGTGGGTGTGGGAATTTCAGGAGTTTTGGGAGGATTTGTTTTTCCTTTTGGGGGTTGA 480
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AGTAATCTCTTGTTCTGTAGATGTGCAACTTCGTCTGGCTGCTCCGTGTAATCTGCACGA 540
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TCTTCAGCTTCGCCCTCTGATGGTATTCAGTCCGTGTTCTTCACTTTGGCGATTTTAGAG 600
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGGATTGAGTTTTTTTTCCCTCGGGGGAAAGTGGTGTTCTTGTTACTTTTTTCTCAATTT 660
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCTTATTAGGGTTTGGTGTAAGAGTGTGTGGAAAGCTCGAACCATTCAGCCTTTGATCTG 720
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AAGAAACTCTGGTGGGCTGGTGGTTCATTGATGTAGTGGTATCCATCGTCCTGACCATTT 780
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGGAGGAGCTCCACCATGGCCTGCCTGAAGCTAGGATCAAGAGCTGATGTCTTCAGAAAG 840
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CAAGGACAAGACTGGTATTGCACAACCGGTCTTCCTAGTGATATAACCGTCACAGTGGGG 900
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAGCAATCTTTTCATCTTCACAAGTTTCCTCTATTATCAAAGAGTGGCCTTTTGGAGCGT 960
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGTATCCGAGAGAAGATTGAGAATGGAGACCACAGTTGTGTCATTGACCTATCGGATATT 1020
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCTGGGGGAGCAAAGGCTTTGGAACTAACTGCTAAGTTCTGCTATGGTGTTAAGTTCGAA 1080
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      ATGACTGCCTCCAATGTTGTGCATCTTCGCTGTGCTGCTGAATATCTCGAGATGACTGAA 1140
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAGATTGCTGAGGGGAATTTGATTGCGCAGACAGAGAACTTCCTTACCCCAACCGTCCTT 1200
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AGGAGTTGGAAAGATTCAATCAAGGCCCTCCATACCTGTGATGACATCATTGATCTTGCT 1260
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAAAAATTGCAAATCGTAAAGAGGTGCATCGACTCAGTTGCAACTAGATCATGTACTGAT 1320
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCTGATTTATTTGGGTGGCCAGTTGTCCAGTACGGAGGCCCCATGCAGAGTCCAGGAGGA 1380
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AGCGTCTTGTGGAATGGCATTAGCACCGGAGCAAGGCCAAGACATAGCAGCCCTGATTGG 1440
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TGGTATGATGATGTTTCATGCTTAAGCCTTCCATTATACAAAAAAGTAATCTCAGCTATG 1500
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAATACCGAGGAATCAATCAGGATATTATTGTTGGATCCTTGAACCACTATGCCAAAAGG 1560
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CGTTTACCTGGCCTGAATCGGCGTAAAAGCATCAGTGATGTCAGCAGTTGCCTTTCAATA 1620
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TCATCTTTAACATCAATCCCTTCTGAAGAGGAACAAAAGTACCTACTTGAGGAAATTGAT 1680
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AGACTGTTACCTTTCCAAAGGGGGGTCACATCTTGCAAGCTGTTATTTGGTCTTCTGCGG 1740
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      ACAGCAATCATCCTAAAAGCCAGCCCTTCTTGCGTGTCAAACTTGGAGAGACGGATAGGT 1800
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      ATGCAGCTTGATAAGGCTACCCTGGAAGATCTTCTGATTCCAAACATCTCTGAGTCTGTT 1860
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAAACGCTCTATGATGTGGATTGTGTCCACAAGATTCTTGACCATTTCTTGGCAATGGAT 1920
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CAAGAAACTGGTGGGGCTTCCCCTGGCCTTGGTGAAGATGCACAAATGTTAGCTTCACCA 1980
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      TCACTTATGCCTATAACAATGGTCGCTAAGTTGATTGATGGCTACCTAGCTGAAGTTGCA 2040
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCAGATGTCAACCTAAAGCTGCCAAAGTTTCGGTCTTTGGCTGCTGCTATACCAGATTAT 2100
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GCCCGGCCAATAGATGACGGACTTTACCGTGCCATTGACATCTATCTGAAGGCGCATCCT 2160
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CACCTGTCTGAATCAGAGAAGGAAGAACTTTGCCGGGTGATGGACTGCCAGAAGCTCTCT 2220
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CTCGAGGCCTGCACTCACGCGGCTCAGAACGAGCGGCTCCCGCTGCGCGTCATCGTGCAG 2280
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GTCCTCTTCTTCGAGCAGCTCCAGCTACGGAGCTCCATCGCCGAGTGCCTCATGGTCTCC 2340
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GAGAACCTCGAAGGCGGCTCGAGGCAGCTCATCCCCACCATCTCCGGCGAGCAATACCGC 2400
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CCCGGCTGGCCCCTGGCCTCCCGGGAGAACCAGGCCCTCCGGGAGGGCATGGACAACATG 2460
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      AAGCAGCGCGTCGCCGACCTGGAGAAGGAGTGCTCCACCATGAGGGATGAGATCGAGCGG 2520
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CTGGGCCGCAGCCGGAGCACCGGCAAGGGCAGATTCTCCCTCAACATGAAACCACAGATT 2580
consensus_7992#1      ------------------------------------------------------------
consensus_7992#2      --------CAGCCCGGAGGCACCGAAGGGCAGATTCTCCCTCAACATGAAACCACAGATT 52
                                                                                  

consensus_7992#0      TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAG 2640
consensus_7992#1      TGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGACGGCGAGCGAGGAG 60
consensus_7992#2      TGCAGCACCAAGGAGGCTATTCCAACGACAGCGACGACAACGGCGACGGCGAGCGAGGAG 112
                      *********************** ************************************

consensus_7992#0      AAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAG 2700
consensus_7992#1      AAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAG 120
consensus_7992#2      AAGATGGCCGTGGTAAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAG 172
                      ************** *********************************************

consensus_7992#0      AAGCTGTCCATAGAAGCATGATGATGATGATCCGCTGATCACTCACACTACCAATCCTTT 2760
consensus_7992#1      AAGCTGTCCATAGAAGCATGATGATGATGATCCGNTGATCACTCACACTACCAATCCTTT 180
consensus_7992#2      AAGCTKTC-ATAGAAGCTTGATGATGATGATCCGCTGATCACTCACACTAC-GATCCTTT 230
                      ***** ** ******** **************** ****************  *******

consensus_7992#0      TCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTT 2820
consensus_7992#1      TCACTTTTCTTCTTCTCTGAATTCTTGATAATCGAGTGCCATCAGCTCAGTAGATGTGTT 240
consensus_7992#2      TNACTTTTCT--CTCTCTGAATTCT-GATA-TCGAGTGC-ATCAG-TCAGTAGATGTGTT 284
                      * ********   ************ **** ******** ***** **************

consensus_7992#0      GCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCAT 2880
consensus_7992#1      GCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGTGTTTTACATCCAT 300
consensus_7992#2      GCCGTGTTGGTGTCGTA-CTGCAA--CTAGTGAGTTGT-GGTAGAGTGTTTTCTCTC--- 337
                      ***************** **** *   *********** * ***********   **   

consensus_7992#0      CCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTG 2940
consensus_7992#1      CCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTG 360
consensus_7992#2      ---TCCTTC--GCGGGG------------------------------------------- 349
                         *** **  ** **                                            

consensus_7992#0      CTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATATCT 3000
consensus_7992#1      CTAAGTTTTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATAAAA 420
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      GTTGGAATTTGGATCACATCTCATTGGATTGTTTCTTCTGTGCGTCGACAGTAGATAAAT 3060
consensus_7992#1      AAAAAAAAAAAAAAAAA------------------------------------------- 437
consensus_7992#2      ------------------------------------------------------------
                                                                                  

consensus_7992#0      CGGCACGTTTGGTTCTTTGCCAATCCTAACATTATC 3096
consensus_7992#1      ------------------------------------
consensus_7992#2      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)