These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence [CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCCCCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAAAACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAAACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCACCCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTGGCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTCCCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCCAAAAAACTTTTTGGGGGGGGGCAACTTGGG] [+] EMBL BE040133 [CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCCCCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAAAACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAAACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCACCCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTGGCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTCCCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCCAAAAAACTTTTTGGGGGGGGGCAACTTGGG] consensusID : consensus_7995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 563 fasta sequence [AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC-TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT-GAA-CATATACTT-GGGTAA-GGATTATTCAAGCAGTTGG-ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT] [+] EMBL AK120705 [AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT GAA CATATACTT GGGTAA GGATTATTCAAGCAGTTGG ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT] [+] EMBL C97027 [ GCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCNTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAANACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCNTTTCTACTCTATTATCCTTNCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGGAACCATATACTTGGGGTAANGGTTTATTCAAGCAGTTGGNCCATGg ] [+] EMBL CB000924 [ CCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTTTTTAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT GAA CATATACTT GGGTAA GGATTATTCAAGCAGTTGG ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCA ] consensusID : consensus_7995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACCGTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA999944 [CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACCGTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7995#0 -----------------------CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGG 37 consensus_7995#2 -------------------------CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACC 35 consensus_7995#1 AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGG 60 ********************************* consensus_7995#0 GCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 97 consensus_7995#2 GTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 95 consensus_7995#1 GCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 120 * ********************************************************** consensus_7995#0 TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 157 consensus_7995#2 TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 155 consensus_7995#1 TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 180 ************************************************************ consensus_7995#0 ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 217 consensus_7995#2 ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 215 consensus_7995#1 ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 240 ************************************************************ consensus_7995#0 AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 277 consensus_7995#2 AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 275 consensus_7995#1 AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 300 ************************************************************ consensus_7995#0 AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 337 consensus_7995#2 AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 335 consensus_7995#1 AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 360 ************************************************************ consensus_7995#0 TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 397 consensus_7995#2 TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 395 consensus_7995#1 TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 420 ************************************************************ consensus_7995#0 GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 457 consensus_7995#2 GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 455 consensus_7995#1 GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 480 ************************************************************ consensus_7995#0 TCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANN 517 consensus_7995#2 TCTTACTACTAGTACAAGTGCCATGATTCAGGACT------------AAAAAAAAAAAAA 503 consensus_7995#1 TCTTACTACTAGTACAAGTGCCATGATTCAGGACT--------------GTTTAAGGAGT 526 *********************************** * * consensus_7995#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 577 consensus_7995#2 AAAAAAAAAAAAAAAAA------------------------------------------- 520 consensus_7995#1 CATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT----------------------- 563 consensus_7995#0 NNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCC 637 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 CCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAA 697 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 AACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAA 757 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 ACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCAC 817 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 CCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTG 877 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 GCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTC 937 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 CCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCC 997 consensus_7995#2 ------------------------------------------------------------ consensus_7995#1 ------------------------------------------------------------ consensus_7995#0 AAAAAACTTTTTGGGGGGGGGCAACTTGGG 1027 consensus_7995#2 ------------------------------ consensus_7995#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||