These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence [CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG] [+] EMBL CB659281 [CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG] [-] EMBL AU056600 [ ttttttttTTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTG ] [+] EMBL CB683563 [ CCAATACTTAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAAATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAACCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCCCTGCCGTTGCTGCTGGTCATGAGGAACAACCCCGTCTGCTCGGCCCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCAAACTGCTCCGTGGCGAACTGCCCGTAC ] consensusID : consensus_8001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [TGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT] [+] EMBL CB632709 [TGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT] [+] EMBL CB621269 [TGCTAGTCCTTCATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAAATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAACCGCCGCCGCCGCCGCCGCCGCCGGGGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAACGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGGCGGCGAACGCGAACTGCTCCGTGGCGAACTGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8001#0 CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTA 60 consensus_8001#1 --------------------------TGCTAGTGCTACATTATACTAAGAATCTAGATTA 34 ********************************** consensus_8001#0 CAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCC 120 consensus_8001#1 CAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCC 94 ************************************************************ consensus_8001#0 AATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATA 180 consensus_8001#1 AATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATA 154 ****************** ***************************************** consensus_8001#0 CCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAA 240 consensus_8001#1 CCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAA 214 ************************************************************ consensus_8001#0 TATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTG 300 consensus_8001#1 TATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTG 274 ************************************************************ consensus_8001#0 CTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAAT 360 consensus_8001#1 CTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAAT 334 *************** ******************************************** consensus_8001#0 TTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATT 420 consensus_8001#1 TTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATT 394 ************************************************************ consensus_8001#0 CTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCAT 480 consensus_8001#1 CTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCAT 454 ************************************************************ consensus_8001#0 GTCGTAGCCGCCGCCGCCG------------GCGACGTGGCCGGCGCCGTCGCTGCCGTT 528 consensus_8001#1 GTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTT 514 ******************* ***************************** consensus_8001#0 GCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAG 588 consensus_8001#1 GCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAG 574 ************************************************************ consensus_8001#0 CGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGC 648 consensus_8001#1 CGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGC 634 ************************************************************ consensus_8001#0 GAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG- 702 consensus_8001#1 GAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT 689 ****************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||