These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2552 fasta sequence [CCCCCAAAACCCCCCTGCCTTCTCTCGCCGATTCCGCCACCGCCGCCGCGCCGCGCCTCGCCGCCGGCCGCCCTTCGATCTCCTCCTCCTCCTCGGAATGGATCTCTACATGGACGACTACATCGACCCCTACGAGGAGGCCGAGGCGGAGGCCGCCGCGGAAGCCGCCGGGCTGACGTCCGCGGCAGCGGCGGAGGACTCCTCCGACGAGGGCGACTCCGAGGACGACTCCGAGGCCGAGAGCGACTACGAGGAGAGGTCCTACGGCCTCCTCCGCTCCGGCAACCACCGCGTGCGCAACCCGGACGGCACCTTCCGCTGCCCCTTCTGCCCCGGCAAGAAGAAGCAGGACTACAAGCTCAAGGACCTCCTCCAGCACGCCGACGGCATTGGCGCCTCCAGCAAGCGCCGCCGCCACGGCCGCGAGCGCGCCTTCCACCGCGCCTTCGCCCGATTCGTCCGCACCGACCCTTCCTTCGCCCAAGACCTCGCCGCCATCAACGGGATCGCCACCACTGCTGATGCTATCTCTAATTCTAGTGCTGCCGGTGCCAAGGAGAAGGCGGATGCCAATGGCGACACAGACGGATCCGCTTCGGTGGCGGCTGTGGCCGCGGGGAATAGACGGGAGGAGGAGAGGTTTGCTTGGCCATGGAGTGGGGTTCTTGCAGCTGGTGCAGGGTTCAATGCCGAGGACTTCGCGGATAGGGTCGCAATGTTTGGTTTGGATGATGTTGTGCCTTTAGTTGTCGATGATGCGGAAGGCGCTGATAGCTTTGC-GATTGTGAGGTTCGCTAATGGTTGGGGTGGATTCGGCGATGCGCTCACGCTCGAGAACCATTTCAACAAGAATAAGCTTGGGAAGAATGAATGGGATGCAAGGGGTAGTGCTGGAGATGCTGTGAAGGGAGATGATGGGGACACAGATGTTAAGGTTTATGGTTGGGTTGCCCGAGAAGGGGACTATAATGCCGGGAATGTGGTGGGCAGGTATTTGAGGAAGCATACGAACCTGACAACCATAGATGAGGTCTCCAAGAGTGAATCGGAAAAGTCGGGGAAGATGGTAGCGATACTGGCAACTCAGATCGAGGCGAAAAATCGATTCTTGCAGGACTTGGAGACAAAAAAGAATGCAACCGAACTCTCCATTGCACGGCTCGAGGAGGACAACAGGAAGCTACACGATGCATATAATGAAGAAATGCGCAATCTACACCGGAGAGCTCGTGATTATGCTTTAAGAGTTTTCCAGGATAATGAAAACTTGAAGCTTGAATTAGATAGCAGGAGGAGAGAATTGAATTCACGTGCTAAGCAGCTTGAAAAGATAACAGCTGAGAATGCAAGCGACAGGAAAAAACTTGATGATCAGAAGCAAAAGGCAAAGGATGATAATAGTGAACTTGAGCTAGCAAGCATAGAACAGCAGAGGGCTGATGAAGATGTAATGAAGCTAGTTGAGGATCAGAAGAG-GGAAAAGGAAGATGTCCTTGCAAGAATGCTTCAGCTGGAAAAAGAGCTGCATGAAAAACAACAGCTTGAGCTTGAAGTAACACGGCTGAATGGTACACTTCAAGTGATGAAGCATTTGGAAGGAGACGATGATGGGGATATTCATGATAAGATGGAGAAATTGAGTGAAAGATTAGAACATGAAAAGAAACGTTT-GGAAGAATTGAGCGGAGAGCTGG-TGAAGAAAGAACGTGAAAGCAACGATGAGTTA-CAAGAGGCCAGAAAAGAACTGATAATGGGTTTGGAGGACATGCTAACTGGGCGAACTGCTATTGGGATAAAAAGGATGGGGGAACTTGATGAGAAACCTTTCCAAAATGCATGCAAGAGAAAGTACGGAAACGATGACTATGAGATCAAAGCTGCGGAGCTGGTCTCAAGTTGGCAGGAGGAAATAAAGAAGCCATCCTGGCATCCTTATAAGATTATAACGGTTGATGGCGAAGATAAGGAAGTTGTAGATGATGACGACACGAAGCTGCGGCACTTGTGGATCGAGTACGGTGACGATGTGTGCAATGCAGTGAAGACCGCCCTGAGCGAGGTCAATGAGTACAATGCCAGTGGACGGTATGTTGTGCCCGAGCTGTGGAACTTCAGGAAAGGCCGAAAGGCGACAATGAAGGAGGTGCTCAAGTACATCTTTGGACAGATAGAGACAACCAGCAAGCGCAGGAGGCCGTGAAGTTCGTCCTTCGATGGATGAAGAAGCTGACAGGCAAGCGAAGGATGG--TTTGAGG-TGCTGGGTATTGGTGCTAGGTATCAAGAGCTGCTGCCTTCTGTTATCATCTCAGGTCAGGTTGGAGGCGCTGGTCAATTGATGGGTCTAAGTTGATGAATACTAGTGTATTGATCAATGGATGCCCATAAGGCTGTGCCAATCCTTAGTTATAATGATTATGGTTATGGTCAGTGTCAGGCTGTAGAAATAATCCTGTGTTGTGTCCCTTTGAGTTGTAGAATAATCGTCTGTAATAATTTCGATATACTTTCGTGGTCCAAGACATCATAAATCTAAGTGATTAGCTACTAAAAAA] [+] EMBL AK066686 [CCCCCAAAACCCCCCTGCCTTCTCTCGCCGATTCCGCCACCGCCGCCGCGCCGCGCCTCGCCGCCGGCCGCCCTTCGATCTCCTCCTCCTCCTCGGAATGGATCTCTACATGGACGACTACATCGACCCCTACGAGGAGGCCGAGGCGGAGGCCGCCGCGGAAGCCGCCGGGCTGACGTCCGCGGCAGCGGCGGAGGACTCCTCCGACGAGGGCGACTCCGAGGACGACTCCGAGGCCGAGAGCGACTACGAGGAGAGGTCCTACGGCCTCCTCCGCTCCGGCAACCACCGCGTGCGCAACCCGGACGGCACCTTCCGCTGCCCCTTCTGCCCCGGCAAGAAGAAGCAGGACTACAAGCTCAAGGACCTCCTCCAGCACGCCGACGGCATTGGCGCCTCCAGCAAGCGCCGCCGCCACGGCCGCGAGCGCGCCTTCCACCGCGCCTTCGCCCGATTCGTCCGCACCGACCCTTCCTTCGCCCAAGACCTCGCCGCCATCAACGGGATCGCCACCACTGCTGATGCTATCTCTAATTCTAGTGCTGCCGGTGCCAAGGAGAAGGCGGATGCCAATGGCGACACAGACGGATCCGCTTCGGTGGCGGCTGTGGCCGCGGGGAATAGACGGGAGGAGGAGAGGTTTGCTTGGCCATGGAGTGGGGTTCTTGCAGCTGGTGCAGGGTTCAATGCCGAGGACTTCGCGGATAGGGTCGCAATGTTTGGTTTGGATGATGTTGTGCCTTTAGTTGTCGATGATGCGGAAGGCGCTGATAGCTTTGC GATTGTGAGGTTCGCTAATGGTTGGGGTGGATTCGGCGATGCGCTCACGCTCGAGAACCATTTCAACAAGAATAAGCTTGGGAAGAATGAATGGGATGCAAGGGGTAGTGCTGGAGATGCTGTGAAGGGAGATGATGGGGACACAGATGTTAAGGTTTATGGTTGGGTTGCCCGAGAAGGGGACTATAATGCCGGGAATGTGGTGGGCAGGTATTTGAGGAAGCATACGAACCTGACAACCATAGATGAGGTCTCCAAGAGTGAATCGGAAAAGTCGGGGAAGATGGTAGCGATACTGGCAACTCAGATCGAGGCGAAAAATCGATTCTTGCAGGACTTGGAGACAAAAAAGAATGCAACCGAACTCTCCATTGCACGGCTCGAGGAGGACAACAGGAAGCTACACGATGCATATAATGAAGAAATGCGCAATCTACACCGGAGAGCTCGTGATTATGCTTTAAGAGTTTTCCAGGATAATGAAAACTTGAAGCTTGAATTAGATAGCAGGAGGAGAGAATTGAATTCACGTGCTAAGCAGCTTGAAAAGATAACAGCTGAGAATGCAAGCGACAGGAAAAAACTTGATGATCAGAAGCAAAAGGCAAAGGATGATAATAGTGAACTTGAGCTAGCAAGCATAGAACAGCAGAGGGCTGATGAAGATGTAATGAAGCTAGTTGAGGATCAGAAGAG GGAAAAGGAAGATGTCCTTGCAAGAATGCTTCAGCTGGAAAAAGAGCTGCATGAAAAACAACAGCTTGAGCTTGAAGTAACACGGCTGAATGGTACACTTCAAGTGATGAAGCATTTGGAAGGAGACGATGATGGGGATATTCATGATAAGATGGAGAAATTGAGTGAAAGATTAGAACATGAAAAGAAACGTTT GGAAGAATTGAGCGGAGAGCTGG TGAAGAAAGAACGTGAAAGCAACGATGAGTTA CAAGAGGCCAGAAAAGAACTGATAATGGGTTTGGAGGACATGCTAACTGGGCGAACTGCTATTGGGATAAAAAGGATGGGGGAACTTGATGAGAAACCTTTCCAAAATGCATGCAAGAGAAAGTACGGAAACGATGACTATGAGATCAAAGCTGCGGAGCTGGTCTCAAGTTGGCAGGAGGAAATAAAGAAGCCATCCTGGCATCCTTATAAGATTATAACGGTTGATGGCGAAGATAAGGAAGTTGTAGATGATGACGACACGAAGCTGCGGCACTTGTGGATCGAGTACGGTGACGATGTGTGCAATGCAGTGAAGACCGCCCTGAGCGAGGTCAATGAGTACAATGCCAGTGGACGGTATGTTGTGCCCGAGCTGTGGAACTTCAGGAAAGGCCGAAAGGCGACAATGAAGGAGGTGCTCAAGTACATCTTTGGACAGATAGAGACAACCAGCAAGCGCAGGAGGCCGTGAAGTTCGTCCTTCGATGGATGAAGAAGCTGACAGGCAAGCGAAGGATGG TTTGAGG TGCTGGGTATTGGTGCTAGGTATCAAGAGCTGCTGCCTTCTGTTATCATCTCAGGTCAGGTTGGAGGCGCTGGTCAATTGATGGGTCTAAGTTGATGAATACTAGTGTATTGATCAATGGATGCCCATAAGGCTGTGCCAATCCTTAGTTATAATGATTATGGTTATGGTCAGTGTCAGGCTGTAGAAATAATCCTGTGTTGTGTCCCTTTGAGTTGTAGAATAATCGTCTGTAATAATTTCGATATACTTTCGTGGTCCAAGACATCATAAATCTAAGTG ] [+] EMBL CB639802 [ CCCTGCCTTCTCTCGCCGATTCCGCCACCGCCGCCGCGCCGCGCCTCGCCGCCGGCCGCCCTTCGATCTCCTCCTCCTCCTCGGAATGGATCTCTACATGGACGACTACATCGACCCCTACGAGGAGGCCGAGGCGGAGGCCGCCGCGGAAGCCGCCGGGCTGACGTCCGCGGTTTTTGCGGAGGACTCCTCCGACGAGGGCGACTCCGAGGACGACTCCGAGGCCGAGAGCGACTACGAGGAGAGGTCCTACGGCCTCCTCCGCTCCGGCAACCACCGCGTGCGCAACCCGGACGGCACCTTCCGCTGCCCCTTCTGCCCCGGCAAGAAGAAGCAGGACTACAAGCTCAAGGACCTCCTCCAGCACGCCGACAGCATTGGCGCCTCCAGCAAGCGCCGCCGCCACGGCCGCGAGCGCGCCTTCCACCGCGCCTTCGCCCGATTCGTACG ] [+] EMBL C27232 [ TGCCTTTAGTTGTCGATGATGCGGAAGGCGCTGATAGCTTTGCNGTGTGTGAGGTTCGCTAATGGTTGGGGTGGATTCGGCGATGCGCTCACGCTCGAGAACCATTTCAACAAGAATAAGCTTGGGAAGAATGAATGGGATGCAAGGGGTAGTGCTGGAGATGCTGTGAAGGGAGATGATGGGGACACAGATGTTAAGGTTTATGGTTGGGTTGCCCGAGAAGGGGACTATAATGCCGGGAATGTNGTGGGCAGGTATTTNAGGAAGCATACGAACCTGACAACCATAGATGAGGTCTCCAAGAGTGAATCGGAAAAGTCGGGGAAGATGGTAGCGATACTTGCAACTCAGATCGAGGCGAAAAATCGATTCTTGCAGGACTTGGAGACAAAAAAG ATGCAACCG ACTNT CATTGCAC GCTCGA GAAGAC ACAGG AGCT ] [+] EMBL AU030178 [ GGAAAAAACTTGATGATCAGAAGCAAAAGGCAAAGGATGATAATAGTGAACTTGAGCTAGCAAGCATAGAACAGCAGAGGGCTGATGAAGATGTAATGAAGCTAGTTGAGGATCAGAAGAGCCGAAAAGGAAGATGTCCTTGCAAGAATGCTTCAGCTGGAAAAAGAGCTGCATGAAAAACAACAGCTTGAGCTTGAAGTAACACGGCTGAATGGTACACTTCAAGTGATGAAGCATTTGGAAGGAGACGATGATGGGGATATTCATGATAAGATGGAG AATTGAGTGACAGATTAGACCATGAAAAG AACGTTTGGGAAGAATTGAGCGGAGANCTGGTTGAAGAAAG ACGTGAAAGC ACGATGAGTTACCAAGAGGCCAG AAAG ACTGATATTGGGTTTTGAGGACtg ] [+] EMBL AU030179 [ ATGGGTTTTGAGGTTGCTGGGTATTGGTNCTAGGTATCAAGAGCTGCTGCCTTCTGTTATCATCTCAGGTCAGGTTGGAGGCGCTGGTCAATTGATGGGTCTAAGTTGATGAATACTAGTGTATTGATCAATGGATGCCCATAAGGCTGTGCCAATCCTTAGTTATAATGATTATGGTTATGGTCAGTGTCAGGCTGTAGAAATAATCCTGTGTTGTGTCCCTTTGAATTGTAGAATAATCGTCTGTAATAATTTCGATATACTTTCGTGGTCCAAGACATCATAAATCTAAGTGATTAGCTACTAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||