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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence
[TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTAAGAGGGA]
[+] EMBL CB682355 [TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTG ]
[-] EMBL CB682354 [ GCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTAAGAGGGA]
consensusID : consensus_8003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CTGATGTGACCCAGAGGAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGGGACGGTGCAGGTCGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCCTTGGTGTCCTGCCCGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTGGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTNGGGTGC]
[-] EMBL CA755008 [CTGATGTGACCCAGAGGAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGGGACGGTGCAGGTCGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCCTTGGTGTCCTGCCCGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTGGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTNGGGTGC]
consensusID : consensus_8003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAG]
[-] EMBL AK063057 [AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAG]
consensusID : consensus_8003#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[CCGGNTTCGGCAGCNGCGGGTACCACTTCCGGGACCNCCCATCTCCACGCCGCCCCGGGTTCCCCGGTGCNCGCACGGATGTTGCTGTGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTGCGAGGGA]
[-] EMBL AU056633 [CCGGNTTCGGCAGCNGCGGGTACCACTTCCGGGACCNCCCATCTCCACGCCGCCCCGGGTTCCCCGGTGCNCGCACGGATGTTGCTGTGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTGCGAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8003#1 ------------------------------------------------------------
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCAT 60
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 ------------------------------------------------------------
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 CAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGC 120
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 ------------------------------------------------------------
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 TAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCA 180
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 --------------------------------------------CTGATGTGACCCAGAG 16
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 GCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAG 240
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 GAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGA 76
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 GAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGA 300
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 CACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCG 136
consensus_8003#3 ------------------------------------------------------------
consensus_8003#0 CACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCG 360
consensus_8003#2 ------------------------------------------------------------
consensus_8003#1 CGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCAT--CGAGCTCGCGAAC 194
consensus_8003#3 --------CCGGNTTCGGCAGCNGCGGGT--------ACCACTTC--CGGGACCNCCCAT 42
consensus_8003#0 CGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCAT--CGAGCTCGCGAAC 418
consensus_8003#2 -AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAAC 59
* * * * * ** * ** * * *
consensus_8003#1 CCCATCCAGCTCGCC--CCCATGAACACCCAGTACCTG---------------------- 230
consensus_8003#3 C---TCCACGCCGCC--CCG--GGTTCCCCGGTGCNCG---------------------- 73
consensus_8003#0 CCCATCCAGCTCGCC--CCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCG 476
consensus_8003#2 CATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATC 119
* **** * * * * *
consensus_8003#1 -----------------------------------GGACGGTGCAGGT------------ 243
consensus_8003#3 -----------------------------------CACGGATGTTGCTG----------- 87
consensus_8003#0 TTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACG 536
consensus_8003#2 GCAACAGG-----------------CTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCG 162
* * *
consensus_8003#1 ---------------------CGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCC-TTG 281
consensus_8003#3 ---------------------TGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTG 126
consensus_8003#0 TGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCC-TTG 595
consensus_8003#2 C--------------------GGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCC-TGG 201
* * * * * * * * ** * *
consensus_8003#1 GTGTCCTGCCCGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 335
consensus_8003#3 GTGTCCTGCCAGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 180
consensus_8003#0 GTGTCCTGCCAGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 649
consensus_8003#2 GCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACG 261
* * * * * ** * ***** ** * ** ** ** * ** * * *** *
consensus_8003#1 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-GGGCGTCGTTGCCCACCCAGTGGTTGGG 394
consensus_8003#3 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-TGGCGTCGTTGCCCACCCAGTGGTTGGG 239
consensus_8003#0 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-TGGCGTCGTTGCCCACCCAGTGGTTGGG 708
consensus_8003#2 GCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTG 321
* ** * * * ***** * ** * * * * * ** * ** * *
consensus_8003#1 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 454
consensus_8003#3 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 299
consensus_8003#0 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 768
consensus_8003#2 AGCACCAGCGTGGAGTACGCCACCGCGAACGACCA--CCGGACGTTGCGCGAGTCCACGG 379
* ** ** *** * * * * ** ** ** * * ***
consensus_8003#1 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 511
consensus_8003#3 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 356
consensus_8003#0 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 825
consensus_8003#2 GCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCG 439
* * ** ** * * ** ** * ** * ** * * ** ** * * * * * *
consensus_8003#1 TTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 571
consensus_8003#3 TTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 416
consensus_8003#0 TTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 885
consensus_8003#2 CCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCC--GTTCAATTCGATCG 497
* ** * ** * ** ** * *** * * * *** **
consensus_8003#1 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-NGGGTGC-------- 617
consensus_8003#3 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-TGGGTGCGTGTTGCG 470
consensus_8003#0 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-TGGGTGCGTGTTAAG 939
consensus_8003#2 TTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACG 557
* ** * * *** * * * *** ** * ** * ** *
consensus_8003#1 ------
consensus_8003#3 AGGGA- 475
consensus_8003#0 AGGGA- 944
consensus_8003#2 GTGCAG 563
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||