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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1113 fasta sequence
[CATGGACTGCAGGAGTAGAAACCCTCATCGTCTCCCATCGCGCCGCCACCTCCTCGCTCCCCATCCACAGTGCACGCCGCCCGCTCTCCCTGCCCCCGAGCGCACCGAAGAGGAAGCCCTAGCTCCCCCACAATCCCTGCCCCCAAGCTCTCTCCATCCCGCGCTGCCATGCCCAATCCCCCTCCGGAGATCTGGGCGTCGGCGTGAATCAGATCGGGGCGGCGACAGGGAGTTCGAAGCACGAAGTGGCGGCATCGAACCGGAAACCCCACGGCGAGCGCCATCCCTTCCCGCACTTGCTCGATCCCTCCCCTCCTGCCGCAGTCTGCAGCCATGGCATTCCGATGTAGTGGGCTTCGAGCTCGAAGGCGGCGGGCAGGCCTGCGCGAGCACCGGGGGAGCAGGAGCTGCGGCCGTCCAAGTCGTGGGGGGATCCTCATCTTCGGGCTTCGGCCTCATTGGCGCCACCACCACCACCACCACCTTAGTGGTGAGAAGCATCAAACGCTCCAATTAAGCTGTTTGCATCGTTTCCTGCCCAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCTAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGACATCAAGCGAGGTTGGTGTGGTGAATAATGTGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGGAACAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACTAATCTATTAGTGAAATTAGTGAAAAGTACACTTA]
[+] EMBL CF320109 [CATGGACTGCAGGAGTAGAAACCCTCATCGTCTCCCATCGCGCCGCCACCTCCTCGCTCCCCATCCACAGTGCACGCCGCCCGCTCTCCCTGCCCCCGAGCGCACCGAAGAGGAAGCCCTAGCTCCCCCACAATCCCTGCCCCCAAGCTCTCTCCATCCCGCGCTGCCATGCCCAATCCCCCTCCGGAGATCTGGGCGTCGGCGTGAATCAGATCGGGGCGGCGACAGGGAGTTCGAAGCACGAAGTGGCGGCATCGAACCGGAAACCCCACGGCGAGCGCCATCCCTTCCCGCACTTGCTCGATCCCTCCCCTCCTGCCGCAGTCTGCAGCCATGGCATTCCGATGTAGTGGGCTTCGAGCTCGAAGGCGGCGGGCAGGCCTGCGCGAGCACCGGGGGAGCAGGAGCTGCGGCCGTCCAAGTCGTGGGGGGATCCTCATCTTCGGGCTTCGGCCTCATTGGCGCCACCACCACCACCACCACCTTAGTGGTGAGAAGCATCAAACGCTCCAATTAAGCTGTTTGCA ]
[+] EMBL AK061139 [ CATCGCGCCGCCACCTCCTCGCTCCCCATCCACAGTGCACGCCGCCCGCTCTCCCTGCCCCCGAGCGCACCGAAGAGGAAGCCCTAGCTCCCCCACAATCCCTGCCCCCAAGCTCTCTCCATCCCGCGCTGCCATGCCCAATCCCCCTCCGGAGATCTGGGCGTCGGCGTGAATCAGATCGGGGCGGCGACAGGGAGTTCGAAGCACGAAGTGGCGGCATCGAACCGGAAACCCCACGGCGAGCGCCATCCCTTCCCGCACTTGCTCGATCCCTCCCCTCCTGCCGCAGTCTGCAGCCATGGCATTCCGATGTAGTGGGCTTCGAGCTCGAAGGCGGCGGGCAGGCCTGCGCGAGCACCGGGGGAGCAGGAGCTGCGGCCGTCCAAGTCGT GGGGGATCCTCATCTTCGGGCTTCGGCCTCATTGGCGCCACCACCACCACCACCACCTTAGTGGTGAGAAGCATCAAACGCTCCAATTAAGCTGTTTGCATCGTTTCCTGCCCAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCTAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGACATCAAGCGAGGTTGGTGTGGTGAATAATGTGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGGAACAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACTAATCTATTAGTGAAATTAGTGAAAAGTACAC ]
[+] EMBL C28925 [ CCTCCTCGCTCCCCATCCACAGTGCACGCCGCCCGCTCTCCCTGCCCCCGAGCGCACCGAAGAGGAAGCCCTAGCTCCCCCACAATCCCTGCCCCCAAGCTCTCTCCATCCCGCGCTGCCATGCCCAATCCCCCTCCGGAGATCTGGGCGTCGGCGTGAATNANATCGGGGCGGCGACAGGGAGTTCGAAGCACGAAGTGCGGGCATCGAACCGGAAACCCCACGGCGAGCG CATCCCTTCCNGCACTTGCTCGATCCCTCC ]
[-] EMBL CF320110 [ aagcgagGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGGAACAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTATGT ACTTTTTTACTTGTATGTTGGATTCACTAATCTATTAGTGAAATTAGTGAAAAGTACACTTA]
consensusID : consensus_8004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CGGGTTTAGTTTGACGCNTTCCCGTGATGACTGATTCCCATTTAGTTGTGGCTGTTAATTTGCTCNTGTGCCTGCAATTCAGCATCAAACGGCTCCAATTAAGCTGTTTGGATCGTTTCCTGCCCAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCTAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGACATCAAGCGAGGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACTAATCTATTAGTGAAATTAGTGAAAAGTACACTTAATTTGTCAAAAAAAA]
[+] EMBL AU101011 [CGGGTTTAGTTTGACGCNTTCCCGTGATGACTGATTCCCATTTAGTTGTGGCTGTTAATTTGCTCNTGTGCCTGCAATTCAGCATCAAACGGCTCCAATTAAGCTGTTTGGATCGTTTCCTGCCCAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCTAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGACATCAAGCGAGGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACTAATCTATTAGTGAAATTAGTGAAAAGTACACTTAATTTGTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8004#0 CATGGACTGCAGGAGTAGAAACCCTCATCGTCTCCCATCGCGCCGCCACCTCCTCGCTCC 60
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 CCATCCACAGTGCACGCCGCCCGCTCTCCCTGCCCCCGAGCGCACCGAAGAGGAAGCCCT 120
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 AGCTCCCCCACAATCCCTGCCCCCAAGCTCTCTCCATCCCGCGCTGCCATGCCCAATCCC 180
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 CCTCCGGAGATCTGGGCGTCGGCGTGAATCAGATCGGGGCGGCGACAGGGAGTTCGAAGC 240
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 ACGAAGTGGCGGCATCGAACCGGAAACCCCACGGCGAGCGCCATCCCTTCCCGCACTTGC 300
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 TCGATCCCTCCCCTCCTGCCGCAGTCTGCAGCCATGGCATTCCGATGTAGTGGGCTTCGA 360
consensus_8004#1 ------------------------------------------------------------
consensus_8004#0 GCTCGAAGGCGGCGGGCAGGCCTGCGCGAGCACCGGGGGAGCAGGAGCTGCGGCCGTCCA 420
consensus_8004#1 -----------------------------------------------------CGGGTTT 7
* *
consensus_8004#0 AGTCGTGGGGGGATCCTCATCTTCGGGCTTCGGCCTCATTGGCGCCACCACCACCACCAC 480
consensus_8004#1 AGTTTGACGCNTTCCCGTGATGACTGATTCCCATTTAGTTGTGGCTGTTAAT-TTGCTCN 66
*** * ** * * * * * *** ** * *
consensus_8004#0 CACCTTAGTGGTGAGAAGCATCAAACG-CTCCAATTAAGCTGTTTGCATCGTTTCCTGCC 539
consensus_8004#1 TGTGCCTGCAATTC--AGCATCAAACGGCTCCAATTAAGCTGTTTGGATCGTTTCCTGCC 124
* * *********** ****************** *************
consensus_8004#0 CAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCT 599
consensus_8004#1 CAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCT 184
************************************************************
consensus_8004#0 AGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGAC 659
consensus_8004#1 AGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGAC 244
************************************************************
consensus_8004#0 ATCAAGCGAGGTTGGTGTGGTGAATAATGTGAAGCGGCCCAAGTACAATGTCACTGCCAC 719
consensus_8004#1 ATCAAGCGAGG--------------------AAGCGGCCCAAGTACAATGTCACTGCCAC 284
*********** *****************************
consensus_8004#0 TCTGCAGGGAACAGGAGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGG 779
consensus_8004#1 TCTGCAGG-------AGGACCGAAATAAGCAAGAGTAGGAAGGTGAGGGGCATAACATGG 337
******** *********************************************
consensus_8004#0 GATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGA 839
consensus_8004#1 GATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATGTGAACTTTTGA 397
************************************************************
consensus_8004#0 TATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAAC 899
consensus_8004#1 TATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAAC 457
************************************************************
consensus_8004#0 AAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCC 959
consensus_8004#1 AAGATGTATACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCC 517
************************************************************
consensus_8004#0 CTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGC 1019
consensus_8004#1 CTTTTCTTATAGACCATTATATGTTCCATCTTTGGTGTCATTTCAAATTTGTATGTATGC 577
************************************************************
consensus_8004#0 ACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACT 1079
consensus_8004#1 ACTATTCCCACAATTCCTAGCTGAGCTATGTGATTTTTTTACTTGTATGTTGGATTCACT 637
************************************************************
consensus_8004#0 AATCTATTAGTGAAATTAGTGAAAAGTACACTTA--------------- 1113
consensus_8004#1 AATCTATTAGTGAAATTAGTGAAAAGTACACTTAATTTGTCAAAAAAAA 686
**********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||