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Oryza sativa
cluster # 801 cluster # 801       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_801#0 length = 1388 sequences # 1  
consensus_801#1 length = 692 sequences # 1  

consensusID : consensus_801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1388
fasta sequence
                              [CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG]

[+] EMBL AK064530             [CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG]


>consensus_801#0 CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGC GAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAA AATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGA TCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAA GGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGG GGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGG GGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAAC GGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTAT AGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGAT AACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAG TCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAA TAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGT AGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAG GCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAAC TGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGC AATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGC ACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGA GTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGA AGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAA GGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATT GAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACAT GGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACT TGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTA AGATAATG



consensusID : consensus_801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759177             [ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA]


>consensus_801#1 ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTG AGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTA TTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATC ATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGA TTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGA GTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCAT TTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTAC TGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCC TCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCT AATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATT TTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGA ATAATAAGTGATAGAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_801#0      CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGC 60
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAA 120
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      AATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGA 180
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      TCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAA 240
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGG 300
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGG 360
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAAC 420
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTAT 480
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      AGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGAT 540
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      AACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAG 600
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      TCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAA 660
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      TAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGT 720
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      AGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAG 780
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      GCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAAC 840
consensus_801#1      ------------------------------------------------------------
                                                                                 

consensus_801#0      TGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGC 900
consensus_801#1      -------------ACTGCAGT-GGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGC 46
                                  ** ** ** ** ***** **     ********* * **** *****

consensus_801#0      AATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGC 960
consensus_801#1      AATTGTGACACNTGAGTTC-TGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGC 105
                     **** ****** *** *** ******* ********************************

consensus_801#0      ACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGA 1020
consensus_801#1      ATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGA 165
                     * ********* ******** ***   ** ****  ** ************  *******

consensus_801#0      GTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGA 1080
consensus_801#1      GTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGA 225
                     ******** *** *************** * * ***** * * ****** **** *****

consensus_801#0      AGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAA 1140
consensus_801#1      AGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAA 285
                     ************* ********  ********** ********* ******** ******

consensus_801#0      GGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATT 1200
consensus_801#1      GGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATT 345
                     *************** **** ********** **** **** ******************

consensus_801#0      GAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACAT 1260
consensus_801#1      GAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACAT 405
                     ****** *********** ***** ******** ******** ** ********* ****

consensus_801#0      GGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACT 1320
consensus_801#1      GGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACT 465
                     *********** ***    ** ** ********** *** ***** ********  ****

consensus_801#0      TGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTA 1380
consensus_801#1      TCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTT 525
                     * **** *** ********* ******* **** * ** *********  **  *  ** 

consensus_801#0      AGATAATG---------------------------------------------------- 1388
consensus_801#1      GTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACA 585
                        ****                                                     

consensus_801#0      ------------------------------------------------------------
consensus_801#1      TTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATT 645
                                                                                 

consensus_801#0      -----------------------------------------------
consensus_801#1      ATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA 692
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)