These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1388 fasta sequence [CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG] [+] EMBL AK064530 [CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG] consensusID : consensus_801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA] [-] EMBL CA759177 [ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_801#0 CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGC 60 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAA 120 consensus_801#1 ------------------------------------------------------------ consensus_801#0 AATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGA 180 consensus_801#1 ------------------------------------------------------------ consensus_801#0 TCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAA 240 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGG 300 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGG 360 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAAC 420 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTAT 480 consensus_801#1 ------------------------------------------------------------ consensus_801#0 AGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGAT 540 consensus_801#1 ------------------------------------------------------------ consensus_801#0 AACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAG 600 consensus_801#1 ------------------------------------------------------------ consensus_801#0 TCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAA 660 consensus_801#1 ------------------------------------------------------------ consensus_801#0 TAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGT 720 consensus_801#1 ------------------------------------------------------------ consensus_801#0 AGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAG 780 consensus_801#1 ------------------------------------------------------------ consensus_801#0 GCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAAC 840 consensus_801#1 ------------------------------------------------------------ consensus_801#0 TGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGC 900 consensus_801#1 -------------ACTGCAGT-GGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGC 46 ** ** ** ** ***** ** ********* * **** ***** consensus_801#0 AATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGC 960 consensus_801#1 AATTGTGACACNTGAGTTC-TGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGC 105 **** ****** *** *** ******* ******************************** consensus_801#0 ACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGA 1020 consensus_801#1 ATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGA 165 * ********* ******** *** ** **** ** ************ ******* consensus_801#0 GTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGA 1080 consensus_801#1 GTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGA 225 ******** *** *************** * * ***** * * ****** **** ***** consensus_801#0 AGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAA 1140 consensus_801#1 AGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAA 285 ************* ******** ********** ********* ******** ****** consensus_801#0 GGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATT 1200 consensus_801#1 GGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATT 345 *************** **** ********** **** **** ****************** consensus_801#0 GAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACAT 1260 consensus_801#1 GAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACAT 405 ****** *********** ***** ******** ******** ** ********* **** consensus_801#0 GGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACT 1320 consensus_801#1 GGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACT 465 *********** *** ** ** ********** *** ***** ******** **** consensus_801#0 TGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTA 1380 consensus_801#1 TCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTT 525 * **** *** ********* ******* **** * ** ********* ** * ** consensus_801#0 AGATAATG---------------------------------------------------- 1388 consensus_801#1 GTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACA 585 **** consensus_801#0 ------------------------------------------------------------ consensus_801#1 TTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATT 645 consensus_801#0 ----------------------------------------------- consensus_801#1 ATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA 692 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||