Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8010 cluster # 8010       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8010#0 length = 2672 sequences # 4  
consensus_8010#1 length = 537 sequences # 1  

consensusID : consensus_8010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2672
fasta sequence
                              [GCCGCAATTCGCTCGCCGCCGCCGCCGCCGCCGGTGGGCGGTGGCTTGCCACCTCCCTCTCCGCCTCCGGCAGCCTTCTACGCTGCCCGTCTCCGTCTCTTCTCCCTTCACCCAAATCCCCAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCCGCGGCGCTGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCGAGGGGGTGGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCCCTCGGCCAACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTTCTGACAAACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAATGGCTATCAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGATTTACACATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCACGGTGCCAAGGTGTTGGAAGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCTGATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTACAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGGGATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATGATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCTACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATGGTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTAATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAGGAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTGTCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCACCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCAATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTGCAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGTATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCTGTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCATTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATTAGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATATGCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATATGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTTCTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATACTTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATGTTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGGATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGATGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGCCTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCCATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCATGGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAAGAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTTCCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAAGGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGTGTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTAGCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATATCCCAAGGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCCACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTCGACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGATTTTAATAACAGATAGATAAACAAGAAGCTTAC]

[+] EMBL AK103110             [GCCGCAATTCGCTCGCCGCCGCCGCCGCCGCCGGTGGGCGGTGGCTTGCCACCTCCCTCTCCGCCTCCGGCAGCCTTCTACGCTGCCCGTCTCCGTCTCTTCTCCCTTCACCCAAATCCCTAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCCGCGGCGCTGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCGAGGGGGTGGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCCCTCGGCCAACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTTCTGACAAACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAATGGCTATCAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGATTTACACATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCACGGTGCCAAGGTGTTGGAAGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCTGATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTACAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGGGATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATGATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCTACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATGGTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTAATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAGGAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTGTCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCACCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCAATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTGCAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGTATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCTGTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCATTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATTAGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATATGCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATATGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTTCTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATACTTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATGTTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGGATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGATGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGCCTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCCATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCATGGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAAGAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTTCCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAAGGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGTGTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTAGCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATATCCCAAGGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCCACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTCGACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGATTTTAATAACAGATAGATAAACAAG        ]
[+] EMBL AK102367             [     AATTCGCTCGCCGCCGCCGCCGCCGCCGGTGGGCGGTGGCTTGCCACCTCCCTCTCCGCCTCCGGCAGCCTTCTACGCTGCCCGTCTCCGTCTCTTCTCCCTTCACCCAAATCCCCAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCCGCGGCGCTGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCGAGGGGGTGGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCCCTCGGCCAACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTTCTGACAAACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAATGGCTATCAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGATTTACACATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCCCGGTGCCAAGGTGTTGGAAGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCTGATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTACAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGGGATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATGATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCTACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATGGTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTAATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAGGAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTGTCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCACCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCAATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTGCAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGTATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCTGTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCATTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATTAGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATATGCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATATGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTTCTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATACTTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATGTTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGGATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGATGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGCCTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCAATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCATGGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAAGAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTTCCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAAGGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGTGTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTAGCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATATCCCAAGGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCCACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTCGACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGATTTTAATAACAGATAGATAAACAAGAAGCTTAC]
[+] EMBL C72075               [             CGCCGCCGNCGCCGCCGCCGGTGGGCGGTGGCTTGCNACCTCACTCTCCGCCTCCGGNAGCCTTCTACGCTGNCCGTTTCCGTCTCTNCTCCCTTCACCCAAATCCCCAGACATTCGGCCATGGCCCCNCCTGACTCTNCTCTCTTCTTGGCCGCCCGCCGCGGCGCTGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCNAGGGGGTGGCCTCCTNCTCCTCCTCATCCTCATCGTCGCCGCCGACCACGTCGTCTCGCCCTNGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB630740             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGGTCCAAATGAATCTTACAGATATATATCACCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCAATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTGCAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGTATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCTGTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCATTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATTAGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATATGCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATATGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTTCTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATACTTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATGTTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGGATTTCTCCGATGACATATGCAGAAATCGGCACAGTTATTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_8010#0 GCCGCAATTCGCTCGCCGCCGCCGCCGCCGCCGGTGGGCGGTGGCTTGCCACCTCCCTCT CCGCCTCCGGCAGCCTTCTACGCTGCCCGTCTCCGTCTCTTCTCCCTTCACCCAAATCCC CAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCCGCGGCGC TGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCGAGGGGGT GGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCCCTCGGCC AACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTTCTGACAA ACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAATGGCTAT CAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGATTTACAC ATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCACGGTGCCAAGGTGTTGGA AGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCT GATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTA CAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGG GATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATG ATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCT ACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATG GTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTA ATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAG GAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTG TCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCA CCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCA ATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTG CAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGT ATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCT GTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCA TTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATT AGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATAT GCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATA TGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTT CTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATAC TTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATG TTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGG ATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGA TGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGC CTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCCATCATT TTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCAT GGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAA GAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTT CCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAA GGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGT GTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTA GCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATATCCCAAG GTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCCA CAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTC GACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGAT TTTAATAACAGATAGATAAACAAGAAGCTTAC



consensusID : consensus_8010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [CACAGTTATTAATGAATTCCAANCGCCCAGATGGCAGAANGAAACTATTCCCAACATTACAATTGGGAACCGAATCCTGATTAATCNTGGCCTATATTACAGTNGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCAATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATGTTAGTTTGCTACCATTGAACAAAGTGCATATTNCTCAGACTCNAGCTCCATGGTACTCAGGCAGCATAATTTGACATACAGTGAACTTGGGGTTATGCTTTTGGAAATCTCTATTTTANGGAATACACCTGGTTGTGATTACTGGGCGTAATTTCTGAAATATCTACTCNATTTCCGATNTTTTTTGAATATATTCNCATAGCANATTTATATACATNATCTGCAGATACCTACNATCCAATAATANNTGACCNAAGAAAAATACCATTTGAAATTTTGTTCAAACTTGTTTGGGAGTGGTTTATGATTAAATTAGACCCCNCNAAATTCCATGCCATATAT]

[+] EMBL BE228776             [CACAGTTATTAATGAATTCCAANCGCCCAGATGGCAGAANGAAACTATTCCCAACATTACAATTGGGAACCGAATCCTGATTAATCNTGGCCTATATTACAGTNGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCAATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATGTTAGTTTGCTACCATTGAACAAAGTGCATATTNCTCAGACTCNAGCTCCATGGTACTCAGGCAGCATAATTTGACATACAGTGAACTTGGGGTTATGCTTTTGGAAATCTCTATTTTANGGAATACACCTGGTTGTGATTACTGGGCGTAATTTCTGAAATATCTACTCNATTTCCGATNTTTTTTGAATATATTCNCATAGCANATTTATATACATNATCTGCAGATACCTACNATCCAATAATANNTGACCNAAGAAAAATACCATTTGAAATTTTGTTCAAACTTGTTTGGGAGTGGTTTATGATTAAATTAGACCCCNCNAAATTCCATGCCATATAT]


>consensus_8010#1 CACAGTTATTAATGAATTCCAANCGCCCAGATGGCAGAANGAAACTATTCCCAACATTAC AATTGGGAACCGAATCCTGATTAATCNTGGCCTATATTACAGTNGGCACTTTTATTGGAT ATCCATTGGAGCATTGTTCGGATCAATCATTTTATTTTATATCGCTTTTGGATTGGCGCT AGATTATATTACATGTTAGTTTGCTACCATTGAACAAAGTGCATATTNCTCAGACTCNAG CTCCATGGTACTCAGGCAGCATAATTTGACATACAGTGAACTTGGGGTTATGCTTTTGGA AATCTCTATTTTANGGAATACACCTGGTTGTGATTACTGGGCGTAATTTCTGAAATATCT ACTCNATTTCCGATNTTTTTTGAATATATTCNCATAGCANATTTATATACATNATCTGCA GATACCTACNATCCAATAATANNTGACCNAAGAAAAATACCATTTGAAATTTTGTTCAAA CTTGTTTGGGAGTGGTTTATGATTAAATTAGACCCCNCNAAATTCCATGCCATATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8010#0      GCCGCAATTCGCTCGCCGCCGCCGCCGCCGCCGGTGGGCGGTGGCTTGCCACCTCCCTCT 60
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CCGCCTCCGGCAGCCTTCTACGCTGCCCGTCTCCGTCTCTTCTCCCTTCACCCAAATCCC 120
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCCGCGGCGC 180
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCGAGGGGGT 240
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCCCTCGGCC 300
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      AACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTTCTGACAA 360
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAATGGCTAT 420
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGATTTACAC 480
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCACGGTGCCAAGGTGTTGGA 540
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      AGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCT 600
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTA 660
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGG 720
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATG 780
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCT 840
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATG 900
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTA 960
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAG 1020
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTG 1080
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCA 1140
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCA 1200
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTG 1260
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGT 1320
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCT 1380
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCA 1440
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATT 1500
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      AGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATAT 1560
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      GCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATA 1620
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTT 1680
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATAC 1740
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATG 1800
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGG 1860
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      ATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGA 1920
consensus_8010#1      -----------------------------CACAGTTATTAATGAATTCCAANCGCCCAGA 31
                                                   ********************** **** ***

consensus_8010#0      TGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGC 1980
consensus_8010#1      TGGCAGAANGAAACTATTCCCAACATTACAATTGGGAACCGAATCCTGATTAATCNTGGC 91
                      ******** **********  ***** **************************** ****

consensus_8010#0      CTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCCATCATT 2040
consensus_8010#1      CTATATTACAGTNGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCAATCATT 151
                      ************ **************************************** ******

consensus_8010#0      TTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCAT 2100
consensus_8010#1      TTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATGT-TAGTTTGCTACCAT 210
                      ******************************************* * ***     ** ***

consensus_8010#0      GGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAA 2160
consensus_8010#1      TGAA---------CAAAGTGCATATTNCTCAGACTCNA-----GCTCCATGGTACTCAGG 256
                       ***          **** *  ***  *    **   *       ** *   ***  *  

consensus_8010#0      GAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTT 2220
consensus_8010#1      CAGCATAAT-----TTGACATA----CAGTGAACTTGGGGTTATGC---TTTTGGAAATC 304
                       *   * **     ** * ***    *** * *     *  *** *   ** ***** * 

consensus_8010#0      CCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAA 2280
consensus_8010#1      TCTATTTTANGGAATACACCTGGTTG------TGATTACTGGGCGTAATTTCTGAAATAT 358
                       * ***       * *  *     *       ****  *    ** ** * ****** * 

consensus_8010#0      GGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGT 2340
consensus_8010#1      --CTACTCNAT-------TTCCGATNTTTTTTGAATATATTCN---CATAGCANATTTAT 406
                        ***  * *         * * *    **   ** ***       *** **       *

consensus_8010#0      GTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTA 2400
consensus_8010#1      ATACATNATCTGCAGATACCTACNATCCAATAATANNTGAC----CNAAGAAAAATACCA 462
                       * * *  *   *  **   *   *    *        ***    *    * *  **  *

consensus_8010#0      GCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGT-GGATATCCCAA 2459
consensus_8010#1      TTTGAAATTTTGTTCAAAC--TTGTTTGGGAGTGGTTTATGATTAAATTAGACCCCNCNA 520
                         * **          *   *   ***   * *   ** ** **  *  **   * * *

consensus_8010#0      GGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCC 2519
consensus_8010#1      AATTCCATGC-CATATAT------------------------------------------ 537
                        * * *    *** * *                                          

consensus_8010#0      ACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGT 2579
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      CGACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGA 2639
consensus_8010#1      ------------------------------------------------------------
                                                                                  

consensus_8010#0      TTTTAATAACAGATAGATAAACAAGAAGCTTAC 2672
consensus_8010#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)