These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 981 fasta sequence [CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC-AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA] [+] EMBL AK059944 [CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTTTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGC ] [-] EMBL CB632995 [ GAAAAGAACCAGATGGAAGTCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGA ] [+] EMBL BM420838 [ TTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCAC ATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTCATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGACAAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA] consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC-AACC-TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI805516 [CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC AACC TTTAATAAAAAAA ] [+] EMBL AU033120 [ GGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTNTGTTCCCTTCCCACTAACAACTTCNTGTATCAACTTACTAATGTTATTGATTCANTGAGCTCACAATGACACGTGGAATGAACNCCC AAGGCTCCAAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAANTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGCAAACCATTTAATAAGCTGCTTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8011#0 CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCT 60 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGC 120 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTC 180 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATG 240 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGA 300 consensus_8011#1 ---------------------------------CTNAATGGCTGATA-CCAAGACTTCGA 26 * * ***** * ****** ***** consensus_8011#0 AGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAG 360 consensus_8011#1 AGATGATGT--GCTTTCTTG-TAGAACAAG-CTGGGAAGGCTCATCCAAGCTGCTGGGAG 82 ******** ********* ******** ******** ******** ******* *** consensus_8011#0 GGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGT 420 consensus_8011#1 GGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCA--CTCCCCCCGAAGATATTCCTTGT 140 *************** ***** ******** * ** **** * ***** ******** consensus_8011#0 GCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTG 480 consensus_8011#1 GCTGTTTGGCTTCTATACCGCCA-CGCATTGGCAACAATCCTAGGGCAGACTGGTGACTG 199 *** ****************** ************ **** ***************** consensus_8011#0 GGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTA 540 consensus_8011#1 GGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTA 259 ******* **** **** * *********** * ** ***************** ***** consensus_8011#0 CAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTA 600 consensus_8011#1 CAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTA 319 ********** ***** ************** **** **** ************* consensus_8011#0 CTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGT 660 consensus_8011#1 CTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGT 379 ************************* ********** ** ****** ************* consensus_8011#0 TTCCAA------ATCACCTTCTTATATGTACTTACAA--------GATTTATTCAGCTGA 706 consensus_8011#1 TCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCA 439 * ** **** ****** *** ****** * **** *** **** * consensus_8011#0 CAATGATACAACGAGTGAACTCC--AAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAG 764 consensus_8011#1 CAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAG 499 ****** ** ** ******** *** ** * ***** * *** ************ consensus_8011#0 ATAGATATGCTGTGAA-------CTTTACTTC--GGCTATAAAATGTACATATGATGTAG 815 consensus_8011#1 ATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTG--A 557 *** ** ***** *** * ******* ******************** ** consensus_8011#0 TCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTC 875 consensus_8011#1 TGTAGTCTTCTATGAAATTCTTGTAG---TATTACAC--TAGTCTGATGTCCATATGTGT 612 * * ***** ********** ***** ***** ** **** ***** **** *** consensus_8011#0 CTATAGACAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCA 935 consensus_8011#1 CTATAGATAAATAATGGTGTCTGTTGTAAGATGACT--ATTGTTGGCTATTTCCACACCA 670 ******* ******** * **************** * ********* ********* consensus_8011#0 GGCACACTATTTAATTAGCTACTTGTCTTATTGACTA------AAAAAAAAA-------- 981 consensus_8011#1 GGCAACC--TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAA 728 **** * ****** * * ** *** ***** ** ********* consensus_8011#0 ----- consensus_8011#1 AAAAA 733 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||