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Oryza sativa
cluster # 8011 cluster # 8011       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8011#0 length = 981 sequences # 3  
consensus_8011#1 length = 733 sequences # 2  

consensusID : consensus_8011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 981
fasta sequence
                              [CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC-AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA]

[+] EMBL AK059944             [CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTTTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGC                           ]
[-] EMBL CB632995             [                                                                                                                                                                                                                                 GAAAAGAACCAGATGGAAGTCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGA            ]
[+] EMBL BM420838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCAC ATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTCATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGACAAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA]


>consensus_8011#0 CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCT GCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGC CGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTC GCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATG GAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGA AGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAG GGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGT GCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTG GGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTA CAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTA CTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGT TTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGA GTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAA CTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTA GATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGACAAATAATGAAGCCTGTT GTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTG TCTTATTGACTAAAAAAAAAA



consensusID : consensus_8011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence
                              [CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC-AACC-TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI805516             [CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC AACC TTTAATAAAAAAA                                           ]
[+] EMBL AU033120             [                                                                                                                                                                                                                                                                                                                                                    GGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTNTGTTCCCTTCCCACTAACAACTTCNTGTATCAACTTACTAATGTTATTGATTCANTGAGCTCACAATGACACGTGGAATGAACNCCC AAGGCTCCAAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAANTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGCAAACCATTTAATAAGCTGCTTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8011#1 CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAA GGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTC CCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCC TAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGG GAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCAT TGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCT TCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGT TATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCT ACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATA AAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGAT GTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTAT TTCCACACCAGGCAACCTTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAA AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8011#0      CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCT 60
consensus_8011#1      ------------------------------------------------------------
                                                                                  

consensus_8011#0      GCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGC 120
consensus_8011#1      ------------------------------------------------------------
                                                                                  

consensus_8011#0      CGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTC 180
consensus_8011#1      ------------------------------------------------------------
                                                                                  

consensus_8011#0      GCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATG 240
consensus_8011#1      ------------------------------------------------------------
                                                                                  

consensus_8011#0      GAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGA 300
consensus_8011#1      ---------------------------------CTNAATGGCTGATA-CCAAGACTTCGA 26
                                                        *  *  ***** * ****** *****

consensus_8011#0      AGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAG 360
consensus_8011#1      AGATGATGT--GCTTTCTTG-TAGAACAAG-CTGGGAAGGCTCATCCAAGCTGCTGGGAG 82
                      ********   *********  ******** ******** ******** ******* ***

consensus_8011#0      GGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGT 420
consensus_8011#1      GGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCA--CTCCCCCCGAAGATATTCCTTGT 140
                      *************** ***** ******** * **    **** * ***** ********

consensus_8011#0      GCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTG 480
consensus_8011#1      GCTGTTTGGCTTCTATACCGCCA-CGCATTGGCAACAATCCTAGGGCAGACTGGTGACTG 199
                      ***  ******************  ************ **** *****************

consensus_8011#0      GGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTA 540
consensus_8011#1      GGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTA 259
                      ******* **** **** * *********** * ** ***************** *****

consensus_8011#0      CAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTA 600
consensus_8011#1      CAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTA 319
                      **********   ***** **************   **** ****  *************

consensus_8011#0      CTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGT 660
consensus_8011#1      CTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGT 379
                      ************************* ********** ** ****** *************

consensus_8011#0      TTCCAA------ATCACCTTCTTATATGTACTTACAA--------GATTTATTCAGCTGA 706
consensus_8011#1      TCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCA 439
                      * **        **** ****** ***  ****** *        **** *** **** *

consensus_8011#0      CAATGATACAACGAGTGAACTCC--AAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAG 764
consensus_8011#1      CAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAG 499
                      ****** **   ** ********   *** **  * ***** * *** ************

consensus_8011#0      ATAGATATGCTGTGAA-------CTTTACTTC--GGCTATAAAATGTACATATGATGTAG 815
consensus_8011#1      ATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTG--A 557
                      *** ** ***** ***       * *******  ******************** **   

consensus_8011#0      TCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTC 875
consensus_8011#1      TGTAGTCTTCTATGAAATTCTTGTAG---TATTACAC--TAGTCTGATGTCCATATGTGT 612
                      * * ***** ********** *****   ***** **  **** ***** **** ***  

consensus_8011#0      CTATAGACAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCA 935
consensus_8011#1      CTATAGATAAATAATGGTGTCTGTTGTAAGATGACT--ATTGTTGGCTATTTCCACACCA 670
                      ******* ********  * ****************   * ********* *********

consensus_8011#0      GGCACACTATTTAATTAGCTACTTGTCTTATTGACTA------AAAAAAAAA-------- 981
consensus_8011#1      GGCAACC--TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAA 728
                      ****  *  ****** *   * ** *** ***** **      *********        

consensus_8011#0      -----
consensus_8011#1      AAAAA 733
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)