These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1158 fasta sequence [CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGTCGCGGCGTCGCTGATCGCCGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCACTCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGAGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTCTCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGTCATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGATGGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCATGAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTTCATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTGCTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC-AAAA-AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAANNNTT] [+] EMBL AK120582 [CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGTCGCGGCGTCGCTGATCGCCGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCACTCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGAGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTCTCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGTCATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGATGGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCATGAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTTCATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTGCTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC AAAA AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTG ] [+] EMBL AU101737 [ CGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC AAAATNAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAANNNTT] [+] EMBL AU222677 [ cnCTGTATAGAGTGAGTGAGTTTGNTGCAGTGGCCTCCGTTTTTNTTGGCGTGTCANAGATTGGGTTTGTGAAANTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCCAAAAA AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAAaaaaa] consensusID : consensus_8016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 363 fasta sequence [TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCTCAAGGTCTCTCCTGTCAGAGCATA-GGCTGCGTATAA] [+] EMBL OSS11654A [TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCTCAAGGTCTCTCCTGTCAGAGCATA GGCTGCGTATAA] [+] EMBL OSS11615A [TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGG AAATTCTGGGGCCATGCAGCCTTCAAGGTCTCTCCTGTCAGAGCATAGGGCTGCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8016#0 CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGT-CGCGGCGTCGCTGATCGC 59 consensus_8016#1 -----------------------TGACATTGTAACAGATCCATGCTATGCTGCCTTCCAT 37 * *** * ** ** * ** * consensus_8016#0 CGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCAC 119 consensus_8016#1 GACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAG 97 *** ** *** ** * * **** * ** * * * * * consensus_8016#0 TCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCA 179 consensus_8016#1 ATACAAGTTTTACTTAGA--ATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCC 155 ** * * * ** ** * ** ** * * * consensus_8016#0 TGA--TGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACA 237 consensus_8016#1 TGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACA 215 *** ** ************************************************* consensus_8016#0 TGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCT 297 consensus_8016#1 TGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCT 275 ************************************************************ consensus_8016#0 CTATTGGTAGCAAAGCTAAGTGAG-AGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTC 356 consensus_8016#1 CTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCT-CAAGGTC 334 ************************ *************************** ******* consensus_8016#0 TCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGT 416 consensus_8016#1 TCTCCTGTCAGAGCATAGGCTGCGTATAA------------------------------- 363 ***************************** consensus_8016#0 CATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGAT 476 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 GGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCAT 536 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 GAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTT 596 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 CATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTG 656 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 CTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAA 716 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 TCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTG 776 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 CGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTC 836 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 GCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGT 896 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 ATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGT 956 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 TTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAA 1016 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 CTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCCAAAAAAAAAAGTTTCAGACGAT 1076 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 TTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGAT 1136 consensus_8016#1 ------------------------------------------------------------ consensus_8016#0 CAAGTGATACACGCAAANNNTT 1158 consensus_8016#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||