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Oryza sativa
cluster # 8017 cluster # 8017       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8017#0 length = 918 sequences # 2  
consensus_8017#1 length = 648 sequences # 2  
consensus_8017#2 length = 236 sequences # 1  

consensusID : consensus_8017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 918
fasta sequence
                              [AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT]

[-] EMBL CB964529             [AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA758503             [                                                                                                                                                   GACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTGGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT]


>consensus_8017#0 AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTG AGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTC AACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGG TACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCG ACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCT TCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGT GAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTT CCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATT GGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNN NNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAG TTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGT TACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGG CGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAG GCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCG TTTTTGTTTTTCTCATTT



consensusID : consensus_8017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 648
fasta sequence
                              [AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG-GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT]

[+] EMBL AK062869             [AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT]
[+] EMBL OSS11012A            [                                                   CAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTNTGCTGCTGCTTNGGCTCGCCGGGGGAGCGGCGGA CGNNGGAGAAGCTNAGGTGGAGNCGGCGGGTTGCCGCGNGGAAGTTCGNGTACGACCCGCTCAGCTACGCGCTCAAC                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_8017#1 AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACT ACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGG CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCG GCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCG CGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGC CCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATC AAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGAC ACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTAT CCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT



consensusID : consensus_8017#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC]

[+] EMBL CA756740             [GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC]


>consensus_8017#2 GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGG GGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAG CTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCG GCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8017#0      ------------------------------------------------------------
consensus_8017#1      AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACT 60
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      ------------------------------------------------------------
consensus_8017#1      ACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGG 120
consensus_8017#2      -----------------------------------------------------------G 1
                                                                                  

consensus_8017#0      ---------AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 51
consensus_8017#1      CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 180
consensus_8017#2      CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 61
                               ***************************************************

consensus_8017#0      GAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 111
consensus_8017#1      GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 240
consensus_8017#2      GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 121
                      ****** *****************************************************

consensus_8017#0      TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 170
consensus_8017#1      TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 299
consensus_8017#2      TACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGG 181
                      *************** ********* **  *** *** *****  ******* ** *** 

consensus_8017#0      GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 230
consensus_8017#1      GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 359
consensus_8017#2      CGTCCTTTAG-ACGCGT-TTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC--- 236
                       * * *   * **  *   * * ******  ***    *     *  *     * **   

consensus_8017#0      GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACG 290
consensus_8017#1      GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACG 419
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 350
consensus_8017#1      CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 479
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 410
consensus_8017#1      CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 539
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 470
consensus_8017#1      CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 599
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 530
consensus_8017#1      TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT----------- 648
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      AAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNN 590
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      AAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCT 650
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      AATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAA 710
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      AACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAA 770
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      AAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACC 830
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      CCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGC 890
consensus_8017#1      ------------------------------------------------------------
consensus_8017#2      ------------------------------------------------------------
                                                                                  

consensus_8017#0      CCTAAGCGCGTTTTTGTTTTTCTCATTT 918
consensus_8017#1      ----------------------------
consensus_8017#2      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)