These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence [AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT] [-] EMBL CB964529 [AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGG ] [+] EMBL CA758503 [ GACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTGGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT] consensusID : consensus_8017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG-GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT] [+] EMBL AK062869 [AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT] [+] EMBL OSS11012A [ CAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTNTGCTGCTGCTTNGGCTCGCCGGGGGAGCGGCGGA CGNNGGAGAAGCTNAGGTGGAGNCGGCGGGTTGCCGCGNGGAAGTTCGNGTACGACCCGCTCAGCTACGCGCTCAAC ] consensusID : consensus_8017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC] [+] EMBL CA756740 [GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8017#0 ------------------------------------------------------------ consensus_8017#1 AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACT 60 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 ------------------------------------------------------------ consensus_8017#1 ACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGG 120 consensus_8017#2 -----------------------------------------------------------G 1 consensus_8017#0 ---------AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 51 consensus_8017#1 CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 180 consensus_8017#2 CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 61 *************************************************** consensus_8017#0 GAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 111 consensus_8017#1 GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 240 consensus_8017#2 GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 121 ****** ***************************************************** consensus_8017#0 TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 170 consensus_8017#1 TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 299 consensus_8017#2 TACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGG 181 *************** ********* ** *** *** ***** ******* ** *** consensus_8017#0 GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 230 consensus_8017#1 GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 359 consensus_8017#2 CGTCCTTTAG-ACGCGT-TTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC--- 236 * * * * ** * * * ****** *** * * * * ** consensus_8017#0 GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACG 290 consensus_8017#1 GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACG 419 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 350 consensus_8017#1 CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 479 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 410 consensus_8017#1 CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 539 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 470 consensus_8017#1 CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 599 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 530 consensus_8017#1 TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT----------- 648 consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 AAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNN 590 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 AAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCT 650 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 AATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAA 710 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 AACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAA 770 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 AAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACC 830 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 CCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGC 890 consensus_8017#1 ------------------------------------------------------------ consensus_8017#2 ------------------------------------------------------------ consensus_8017#0 CCTAAGCGCGTTTTTGTTTTTCTCATTT 918 consensus_8017#1 ---------------------------- consensus_8017#2 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||