These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1411 fasta sequence [CGCTCCCGAGCAAGAGAAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG-CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT-CTTCCTGTAGTC-CAGTTGAATACAGTTTTTGGATCCTT-AT-GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA-ACTGAAGTAATGCCAGACAAAATTACACCAAAAAA] [+] EMBL AK072060 [CGCTCCCGAGCAAGAGAAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACA ] [+] EMBL AK120533 [ AAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACAAAATTAC ] [+] EMBL CA764770 [ aAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAGCATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACA ] [+] EMBL AA750829 [ GGGATCACAT GAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAGCCCAATCCCACCTTC ] [+] EMBL BQ906416 [ AGTAGTTGCTTCCTGTAGTCACAGTTGAATACAGTTTTTGGATCCTTGATGGTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAACCCTGNAGTAATGCCAGACAAAATTACACCAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||