These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1706 fasta sequence [AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG-TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG-GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT-GAGGTGTCTGCAGATT-GTTGGTGTTGCAAGTATGGTTTGC-GGATCGATCCAA-GATGCTTTCACCATCAGACT-GAATGATCT-AGGAGCTGCTAACCACA-CAAAAAGAGAAC-TTCAGCTGTTTGGTA-CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT-GGCTAATGCC-AGCGATATTAGGTTACATACAT-GCCAACTT-GCCT-GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG-CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATTGCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAATGATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA] [+] EMBL AK105334 [AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACA CAAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT GGCTAATGCC AGCGATATTAGGTTACATACAT GCCAACTT GCCT GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATTGCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAATGATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA] [+] EMBL CA765248 [ CTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTGATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCGATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATGACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTGTGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCTGGAGGCGTCTGCAGATTGGTTGGTGTTGCAAGTATGGTTTGCAGAATCGATCCAAGGATGCTTTCACCATCAGACTGGAATGATCTAAGGAGCTGCTAACCACA CAAAAAGAGAACTTTCAGCTGGTTGGTACCCCTANAGNTCTTTCTATCANGTACTCANGNGGAGCACCAAGCT GGCTAATGGC AGCGATATTANGGTACATAC ] [-] EMBL CB641616 [ CCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACA CAAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT GGCTAATGCC AGCGATATTAGGTTACATACAT GCCAACTT GCCT GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAAaaaaaaag ] [+] EMBL BI801842 [ CAGAACGTTTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAGCGCTGAC AAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACACCTAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCTGGGCTAATGCCAAGCGATATTAGGTTACATACATGGCCAACTTCGCCTGGCCTTTATTTAGGCTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATGCCAATGGATGGAGTCTAGGAGACCAATCATAGTAGAATGGACATGACCAGACC GTGAGCTAATTGTCCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATCCCTTCCTTGTTGAAAaaa ] consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [ACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATGAGGGAATGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCTCGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCA] [+] EMBL CB641615 [ACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATGAGGGAATGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCTCGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8032#0 AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCG 60 consensus_8032#1 ------------------------------------------------ACCCCCATCTCG 12 ************ consensus_8032#0 CCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTC 120 consensus_8032#1 CCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTC 72 ************************************************************ consensus_8032#0 CTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGC 180 consensus_8032#1 CTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGC 132 ************************************************************ consensus_8032#0 ATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCC 240 consensus_8032#1 ATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCC 192 ************************************************************ consensus_8032#0 CTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAG 300 consensus_8032#1 CTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAG 252 ************************************************************ consensus_8032#0 AACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAG 360 consensus_8032#1 AACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAG 312 ************************************************************ consensus_8032#0 GACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAG 420 consensus_8032#1 GACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAG 372 ************************************************************ consensus_8032#0 GCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAA 480 consensus_8032#1 GCGGACGAGCACATGAGGGAAT-GGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAA 431 ************** *** ************************************* consensus_8032#0 CGACGACGAGC------------------------------------------------- 491 consensus_8032#1 CGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCT 491 *********** consensus_8032#0 -----------------------------------TCACCAGGTGGAACCTCGAGCAGTC 516 consensus_8032#1 CGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTC 551 ************************* consensus_8032#0 CAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGA 576 consensus_8032#1 CAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGA 611 ************************************************************ consensus_8032#0 CGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAA 636 consensus_8032#1 CGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAA 671 ************************************************************ consensus_8032#0 TTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCA 696 consensus_8032#1 TTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCA 731 ************************************************************ consensus_8032#0 TGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCC 756 consensus_8032#1 TGGTTTCCTTAATAAA-CCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCC 790 **************** ******************************************* consensus_8032#0 CCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGG 816 consensus_8032#1 CCAAATTATCA------------------------------------------------- 801 *********** consensus_8032#0 AAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTA 876 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAA 936 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAA 996 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GCTCCATCTTTCAGAACGTTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAGGC 1056 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATT 1116 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCTGAGG 1176 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGTCTGCAGATTGTTGGTGTTGCAAGTATGGTTTGCGGATCGATCCAAGATGCTTTCACC 1236 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATCAGACTGAATGATCTAGGAGCTGCTAACCACACAAAAAGAGAACTTCAGCTGTTTGGT 1296 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ACCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCTGGCTAATGCCAGCGA 1356 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TATTAGGTTACATACATGCCAACTTGCCTGCCTTTATTTAGGGTGAGCCGCTAACCTGAC 1416 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATGCAATGGATGGAGTCTAGGA 1476 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTT 1536 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATT 1596 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAAT 1656 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA 1706 consensus_8032#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||