These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1997 fasta sequence [CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCCCCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGCGCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCATTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAAGGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGCTGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCACATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTTGATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGTTATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACACTAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGGAAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGAGGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACACCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATGCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTG-GCACAGAGCTTGGAGTTAAAGTCAAGCATTCAA-GATTTCAT-CATTT-GTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTGCAAAGCCCTATTCGCTATTAGGTAATCATCGTTCACCTGAAAACATTTCAGTGCTAGGGGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTACCAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAGTGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGATGAAGCAAGCAGTGCGA-CCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAAGTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT-T-GCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG-TGCAAGGTATTGTACCAGAACACAAAAAA] [+] EMBL AK073148 [CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCCCCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGCGCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCATTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAAGGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGCTGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCACATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTTGATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGTTATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACACTAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGGAAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGAGGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACACCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATGCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTG GCACAGAGCTTGGAGTTAAAGTCAAGCATTCAA GATTTCAT CATTT GTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTGCAAAGCCCTATTCGCTATTAGGTAATCATCGTTCACCTGAAAACATTTCAGTGCTAGGGGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTACCAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAGTGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGATGAAGCAAGCAGTGCGA CCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAAGTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT T GCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG TGCAAGGTATTGTACCAG ] [+] EMBL AU056771 [ GTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATCCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGNCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTGTGCACAGAGCTTGGAGTTAAAGTCAAGCATTCAAGGATTTCATCCATTTGGTATAGAGATGGGTA TGCTTCAGTTGTTtca ] [+] EMBL BM421938 [ AGCAACCAGTGCGACCCAGTTCGGAAGCGCTTTGAGAAATTAATGAAGAAGAA GGCAAGTTC GGC AAGCCGTGATGACAATTGGGTGAGTACCTCCACGCCACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACGAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGATCTCGCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCAC AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAGCNCCCAGGTATTGTACCAGAACACAAAAAA] [+] EMBL AU056772 [ CAGTTGGGNAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACANGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT T GNTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTNTATNTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG TGCAAGGTATTGTACCAGAAAAAAAAA ] consensusID : consensus_8033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTTACAGAAGTGCAAGGTATTGTACCAGAACACAAGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACACGAACTGGATGTACGCCAAGGGAGGACACTTCATGTGCACTCGGCAGCACCAAACTTACCAAATACCAAAACCCTCAGAAAGTTGGAGAAAAAAAAATCTCTTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCAGATGAATGCATGACTCATTTGCCTGTGCAAGGAGAGAGGGAGGCAAGATTTCAGTGGACAATTGTTCCTGTCTGATTTGTTGAATTTTGTTAGCAGAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTGGGAAGNACTCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAGGGAGTATATACCTCCCTATTAAACCGGAAAAATACTAAATACTACGCCACGAACTGCATTCAAAAA] [+] EMBL BQ907835 [TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTTACAGAAGTGCAAGGTATTGTACCAGAACACAAGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACACGAACTGGATGTACGCCAAGGGAGGACACTTCATGTGCACTCGGCAGCACCAAACTTACCAAATACCAAAACCCTCAGAAAGTTGGAGAAAAAAAAATCTCTTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCAGATGAATGCATGACTCATTTGCCTGTGCAAGGAGAGAGGGAGGCAAGATTTCAGTGGACAATTGTTCCTGTCTGATTTGTTGAATTTTGTTAGCAGAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTGGGAAGNACTCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAGGGAGTATATACCTCCCTATTAAACCGGAAAAATACTAAATACTACGCCACGAACTGCATTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8033#0 CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCC 60 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 CCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGC 120 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCA 180 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAA 240 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGC 300 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCAC 360 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 ATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTT 420 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGT 480 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACAC 540 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGG 600 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 AAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGA 660 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACA 720 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 CCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCA 780 consensus_8033#1 --------------TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCAC-A 45 *** * * * * * * * *** ** ** * consensus_8033#0 GATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATG 840 consensus_8033#1 AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTG-AGTTCCTTTTACAGAAGTGCAAGG 104 *** * ** * * * *** *** * * * **** * * * consensus_8033#0 CCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATA 900 consensus_8033#1 TATTGTACCAGAACACA--AGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACA 162 * * * *** ** ** * * **** * ** ** ** * consensus_8033#0 CCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGA 960 consensus_8033#1 CGAA---------------CTGGATGTACGCCAAGGGAGGACACTTCA-TGTGCACTCGG 206 * * ** * * * *** ** * ** * *** * * consensus_8033#0 GTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTC 1020 consensus_8033#1 CAGCACCAAACTTACCAAATACCAA--AACCCTCAGAAAGTTGGAGAAAAAAAAATCTC- 263 * ** *** ** ** ** * * * **** * **** * consensus_8033#0 GTTCAAATCTATAGTATTTTTAACTTGGTGG-CAGGGTATTATGATTGCTATCATGTATT 1079 consensus_8033#1 -TTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCA-GATGAATG-CATG-ACT 319 ** * * *** * *** * * *** * ** *** * *** * **** * * consensus_8033#0 CTTTGGGCTTGGTTAGAAGTCCGTTGGCACAGAGCTTGGAGTTAAAGTCAAGCATTCAAG 1139 consensus_8033#1 CATTTGCCTGTGCAAGGAGAGAGGGAG-GCAAGATTTCAGTGGACAATTGTTCCTGTCTG 378 * ** * ** * ** ** * * ** ** * * * * * * consensus_8033#0 ATTTCATCATTTGTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTG 1199 consensus_8033#1 ATTTGTTGAATTTTGTTAGCA-GAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTG 437 **** * * ** * * * * * * ** * * * * * * * * ** consensus_8033#0 CAAAGCCCTATTCGCTATTAGGTAATCATC--GTTCACCTGAAAACATTTCAGTGCTAGG 1257 consensus_8033#1 GGAAGNAC--TCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAG-----GG 490 *** * * * * **** *** ** * ** * ** ** ** ** consensus_8033#0 GGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTAC 1317 consensus_8033#1 AGTATATACCTCC-------CTATTAAACCGGA-AAAATACTAAATACTACGCCACGAAC 542 * *** ** ** ** * * ** ** * *** * *** ** * * ** consensus_8033#0 CAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAG 1377 consensus_8033#1 TGCATTCAAAAA------------------------------------------------ 554 *** * consensus_8033#0 TGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGAT 1437 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GAAGCAAGCAGTGCGACCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAA 1497 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCA 1557 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAA 1617 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 ACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCA 1677 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 GACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTC 1737 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGC 1797 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TAGCGTACAGCTCCCGTAGATTGCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTAC 1857 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 ATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACA 1917 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAGTGCAAGGTA 1977 consensus_8033#1 ------------------------------------------------------------ consensus_8033#0 TTGTACCAGAACACAAAAAA 1997 consensus_8033#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||