These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACCTGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC] [+] EMBL CB674151 [TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACCTGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC] [+] EMBL CF292704 [ ATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAA AGGTAGGGCGGGGGTGGCGATAATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGC ] consensusID : consensus_8034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTCGTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGCTCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCGCTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG] [+] EMBL CB641694 [GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTCGTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGCTCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCGCTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG] consensusID : consensus_8034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCCCACCGACGNCNNNNNCGCCCCGCNNNNNNGN] [+] EMBL CF196331 [GATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCCCACCGACGNCNNNNNCGCCCCGCNNNNNNGN] consensusID : consensus_8034#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG] [+] EMBL CF297198 [TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8034#1 GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTT 60 consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 ------------TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTT 48 consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 CTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 120 consensus_8034#3 ----------------TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 44 consensus_8034#0 CTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 108 consensus_8034#2 ----------------------------------------------GATCTTCTTAATCT 14 ************** consensus_8034#1 TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 180 consensus_8034#3 TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 104 consensus_8034#0 TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 168 consensus_8034#2 TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 74 ************************************************************ consensus_8034#1 CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTC 240 consensus_8034#3 CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 153 consensus_8034#0 CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 217 consensus_8034#2 CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 123 ************************************************* consensus_8034#1 GTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGC 300 consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 TCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCG 360 consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 CTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGA 420 consensus_8034#3 ----------------------TTGCTCATCAATGAATGAATCAATCAATGGGAAAATGA 191 consensus_8034#0 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 ATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 480 consensus_8034#3 ATGAGTTATTCGCAGTGGCAGGT-GGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 250 consensus_8034#0 ---------------TGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 262 consensus_8034#2 ---------------TGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 168 ******** ************************************ consensus_8034#1 GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 540 consensus_8034#3 GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 310 consensus_8034#0 GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 322 consensus_8034#2 GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 228 ************************************************************ consensus_8034#1 GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 599 consensus_8034#3 GAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG------------------ 352 consensus_8034#0 GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 381 consensus_8034#2 GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 287 ************* * ************************** consensus_8034#1 AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG----- 654 consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAG 441 consensus_8034#2 AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAG 347 consensus_8034#1 ------------------------------------------------------------ consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 GACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCG-----GTTGGTGGGTG 496 consensus_8034#2 GACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCC 407 consensus_8034#1 ------------------------------------------------------------ consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 GACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACG 556 consensus_8034#2 CACCGACGNCNNNNNCGCCCCGCNNNNNNGN----------------------------- 438 consensus_8034#1 ------------------------------------------------------------ consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 GGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCA 616 consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 ------------------------------------------------------------ consensus_8034#3 ------------------------------------------------------------ consensus_8034#0 TGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACC 676 consensus_8034#2 ------------------------------------------------------------ consensus_8034#1 ----------------------------------------------------- consensus_8034#3 ----------------------------------------------------- consensus_8034#0 TGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC 729 consensus_8034#2 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||