cluster # 8034

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Oryza sativa
cluster # 8034 cluster # 8034 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8034#0 length = 729 sequences # 2
consensus_8034#1 length = 654 sequences # 1

consensus_8034#2 length = 438 sequences # 1
consensus_8034#3 length = 352 sequences # 1

consensusID : consensus_8034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence

                              [TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACCTGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC]

[+] EMBL CB674151             [TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACCTGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC]
[+] EMBL CF292704             [                                                                    ATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAA      AGGTAGGGCGGGGGTGGCGATAATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGC                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_8034#0
TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTG
CTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCT
CATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTT
TGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCG
ATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAG
CGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGG
AAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCA
GGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTG
GAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTG
ATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGG
CGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTG
ACGGAGGAGGAGTACCTGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGC
GCCGTCGCC

consensusID : consensus_8034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTCGTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGCTCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCGCTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG]

[+] EMBL CB641694             [GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTTCTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTCGTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGCTCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCGCTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG]




>consensus_8034#1
GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTT
CTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT
TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT
CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTC
GTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGC
TCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCG
CTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGA
ATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA
GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA
GAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGA
GGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG

consensusID : consensus_8034#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [GATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCCCACCGACGNCNNNNNCGCCCCGCNNNNNNGN]

[+] EMBL CF196331             [GATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCCCACCGACGNCNNNNNCGCCCCGCNNNNNNGN]




>consensus_8034#2
GATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAG
GCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCA
AAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAAC
CGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATG
TGGTGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGG
TTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAGGACGAGGAGGAGG
AGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCCCACCGACGNCNNN
NNCGCCCCGCNNNNNNGN

consensusID : consensus_8034#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG]

[+] EMBL CF297198             [TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG]




>consensus_8034#3
TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCTTCCTTCTTCTCTCATC
TTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGATCCAGCAATATTTTGCT
CCGATCCTCGCAACATATATTCTTGTTTCAAAGTTGCTCATCAATGAATGAATCAATCAA
TGGGAAAATGAATGAGTTATTCGCAGTGGCAGGTGGGCGGGGGTGGCGATGATGAATATG
GTGTCGAGCAGCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGA
GGTGAGAGTAGAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8034#1      GGAGTGGTAGAATAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTT 60
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      ------------TAGTTGGAGCCCACAGGCCGCTTCTCTTCTCTTCTCCTGCTTCTGCTT 48
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      CTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 120
consensus_8034#3      ----------------TTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 44
consensus_8034#0      CTGCTTCTGCTGCTTCTTCTATTCGAACTTACCTTCCTCTTGCTCAGATCTTCTTAATCT 108
consensus_8034#2      ----------------------------------------------GATCTTCTTAATCT 14
                                                                    **************

consensus_8034#1      TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 180
consensus_8034#3      TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 104
consensus_8034#0      TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 168
consensus_8034#2      TCCTTCTTCTCTCATCTTTCGTATTCAAAGCTGTAAATGACTGCAGGCCGAAGGTAGGAT 74
                      ************************************************************

consensus_8034#1      CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAGGTAATTAATTC 240
consensus_8034#3      CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 153
consensus_8034#0      CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 217
consensus_8034#2      CCAGCAATATTTTGCTCCGATCCTCGCAACATATATTCTTGTTTCAAAG----------- 123
                      *************************************************           

consensus_8034#1      GTTGCGATTGTTTCTTAATTACTCCATTAATTTCCAGATACTATATACATGCTTGCTTGC 300
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      ------------------------------------------------------------
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      TCGGGGATCAATATAATATTCCATTATATATGTTTGAAAGAGGGAGTTCTCTCTCGCTCG 360
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      ------------------------------------------------------------
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      CTTAATTTTGTTGTTGATGCAGTTGCTCATCAATGAATGAATCAATCAATGGGAAAATGA 420
consensus_8034#3      ----------------------TTGCTCATCAATGAATGAATCAATCAATGGGAAAATGA 191
consensus_8034#0      ------------------------------------------------------------
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      ATGAGTTATTCGCAGTGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 480
consensus_8034#3      ATGAGTTATTCGCAGTGGCAGGT-GGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 250
consensus_8034#0      ---------------TGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 262
consensus_8034#2      ---------------TGGCAGGTAGGGCGGGGGTGGCGATGATGAATATGGTGTCGAGCA 168
                                     ******** ************************************

consensus_8034#1      GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 540
consensus_8034#3      GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 310
consensus_8034#0      GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 322
consensus_8034#2      GCAGCATCCAACCGGGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTA 228
                      ************************************************************

consensus_8034#1      GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 599
consensus_8034#3      GAGGGAGATATGTNGGTGATGAGCAGCGGCAGCGTCAGGAAG------------------ 352
consensus_8034#0      GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 381
consensus_8034#2      GAGGGAGATATGTGG-TGATGAGCAGCGGCAGCGTCAGGAAGAGCAGCAGCAGCAGGAGG 287
                      ************* * **************************                  

consensus_8034#1      AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG----- 654
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAG 441
consensus_8034#2      AGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCGGCAAG 347
                                                                                  

consensus_8034#1      ------------------------------------------------------------
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      GACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCG-----GTTGGTGGGTG 496
consensus_8034#2      GACGAGGAGGAGGAGGAGAAGNNNCATCGGCNNNNNCGTCAGCATCTTCATCGACATGCC 407
                                                                                  

consensus_8034#1      ------------------------------------------------------------
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      GACCGGAGGACGCGACGTTCAGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACG 556
consensus_8034#2      CACCGACGNCNNNNNCGCCCCGCNNNNNNGN----------------------------- 438
                                                                                  

consensus_8034#1      ------------------------------------------------------------
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      GGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCATGGGGCGGAACCTGCTGGCCA 616
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      ------------------------------------------------------------
consensus_8034#3      ------------------------------------------------------------
consensus_8034#0      TGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACC 676
consensus_8034#2      ------------------------------------------------------------
                                                                                  

consensus_8034#1      -----------------------------------------------------
consensus_8034#3      -----------------------------------------------------
consensus_8034#0      TGCTCCGCCTCGACGACGTCGCCGCCTCCCTCCGCTGCTGGGGCGCCGTCGCC 729
consensus_8034#2      -----------------------------------------------------