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Oryza sativa
cluster # 8036 cluster # 8036       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8036#0 length = 1305 sequences # 4  
consensus_8036#1 length = 583 sequences # 1  

consensusID : consensus_8036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1305
fasta sequence
                              [TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGG-GGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA-AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT-CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT]

[+] EMBL C26933               [TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGGNGGAGGCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK103400             [                                                                                  AGTAGCAGCTGGCATCCTCCTCCTCTGATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTGATGAGGAGGTCTTCTCAGGGGAAGAGCTCCAGCGGCGGCGGCGTTGGCGGCGTACGGAGGTATGACGTGCACGGTGGTGGTAACTTGCTGGCCTGCTACGCGAAGGCGG CGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT]
[+] EMBL AU164520             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAG                                                                                                                                                                                                                                                                      ]
[+] EMBL C97012               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGNGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAAGNTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCANAGGCGC GCGCGCGCGCGCCGAGGCCGA NTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTACACGCGGAGCGCGAGCTGGA                                                                                                                                                                                                     ]


>consensus_8036#0 TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCT CTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTC GGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGC GTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNC TGCTACGCGAAGGCGGGGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTC TCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCC AGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGC TGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTG AAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTAC GTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGG AGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGT GTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCC GTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGAC GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGC GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT TGGCTGCTCACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTC TCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTC GTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTAC CAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT



consensusID : consensus_8036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG]

[+] EMBL AU164521             [CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG]


>consensus_8036#1 CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCG GCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCG CGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGG CGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCG CCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGT GGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCA GGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAA GGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCA GGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGG AGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8036#0      TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCT 60
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      CTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTC 120
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      GGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGC 180
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      GTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNC 240
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      TGCTACGCGAAGGCGGGGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTC 300
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      TCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCC 360
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      AGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGC 420
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      TGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTG 480
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      AAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTAC 540
consensus_8036#1      ----------------------------------CCACGGTCCGCGCCGTGCAGGCGTAC 26
                                                            ***   ****************

consensus_8036#0      GTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGG 600
consensus_8036#1      GTNC-GCAGCGGTGCGTGG-GTCGCTNAGG-ACGTCGGCACGAAGATGACGCCCGCCGG- 82
                      ** * ************** ****** *** *********** ************ *** 

consensus_8036#0      AGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGT 660
consensus_8036#1      AGCAAGAA-CCGTCGAGG-CGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGT 140
                      ****** * ********* ************************** **************

consensus_8036#0      GTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCC 720
consensus_8036#1      GTCGTCGCGCGGGGCACGGCTTCGCCTGG-CAATGCGACGGCGGGTCGCGTGACAGCGCC 199
                      ***************************** ******************************

consensus_8036#0      GTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 780
consensus_8036#1      GTCGCCGNCGGCGTGGTG-ATCTCCGG-CGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 257
                      ******* ********** ******** ********************************

consensus_8036#0      GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGC 840
consensus_8036#1      GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGG-CGACGCGGAGCGC 316
                      ********************************************** *************

consensus_8036#0      GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 900
consensus_8036#1      GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 376
                      ************************************************************

consensus_8036#0      GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 960
consensus_8036#1      GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 436
                      ************************************************************

consensus_8036#0      CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 1020
consensus_8036#1      CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 496
                      ************************************************************

consensus_8036#0      CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 1080
consensus_8036#1      CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 556
                      ************************************************************

consensus_8036#0      TGGCTGCTCACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTC 1140
consensus_8036#1      TGGCTGCTCACGCGGAGCGCGAGCTGG--------------------------------- 583
                      ***************************                                 

consensus_8036#0      TCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTC 1200
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      GTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTAC 1260
consensus_8036#1      ------------------------------------------------------------
                                                                                  

consensus_8036#0      CAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT 1305
consensus_8036#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)