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Oryza sativa
cluster # 8039 cluster # 8039       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8039#0 length = 1246 sequences # 5  

consensusID : consensus_8039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1246
fasta sequence
                              [TACCATTGCAAGAAACCCTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACTGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTATCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACCA-CCACCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCCGGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCGCCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATCGCGGCGCTGCAGCCGGTGGAGATCGACCCGGAGGCCGTGCGGCCGCCGAAGCGGCGCAACGTGCGCATCTCCAAGGACCCGCAGAGCGTGGCGGCGCGGCTGCGGCGGGAGCGCATCAGCGAGCGCATCCGCATCCTGCAGCGGCTCGTCCCGGGCGGCACCAAGATGGACACCGCCTCCATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGTCCCAGGTGCAGTCCCTCGAGCGCGCCGCCGCCGCCACCGGCGCCGCCGCCCACCGCGCCGCCGCATTCGGCGCCGCCTACCCAGCTGCCTTACCCATGCAGCACCACGCTCCGTGGTAGCTGCACGCTACTAGCTCCCACATGGATAGATGGTGATGAGACAATCGTTTCCCATTACTATCGCGTCTCACATGCTTGTCGCCGTCGTCGTCGTCGATCGATCAATCACCACTGCTGCTGCTGCAGCATGCATGATCACATGCATGTGTAAATTAGTAGTACAAGATGTAGGAGACTACCTGATTACTAGTACCATTTATTATTGCTGTTGTACGTTACCGCATGCTAGCTCGTACGTACGTGGCTGCTCCGAGCTTTTGTTGGACTCGCAGCCCGTACGTGCATGCGCGTTTCATTCGACCGTAGGCTTGTACTGTACTGTACACATTTCCTTCTATTCTACCCCCCTGTTCAATGCAGTACGTTT]

[+] EMBL AK060477             [TACCATTGCAAGAAACCCTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACTGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTATCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACCA CCACCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCCGGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCGCCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATCGCGGCGCTGCAGCCGGTGGAGATCGACCCGGAGGCCGTGCGGCCGCCGAAGCGGCGCAACGTGCGCATCTCCAAGGACCCGCAGAGCGTGGCGGCGCGGCTGCGGCGGGAGCGCATCAGCGAGCGCATCCGCATCCTGCAGCGGCTCGTCCCGGGCGGCACCAAGATGGACACCGCCTCCATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGTCCCAGGTGCAGTCCCTCGAGCGCGCCGCCGCCGCCACCGGCGCCGCCGCCCACCGCGCCGCCGCATTCGGCGCCGCCTACCCAGCTGCCTTACCCATGCAGCACCACGCTCCGTGGTAGCTGCACGCTACTAGCTCCCACATGGATAGATGGTGATGAGACAATCGTTTCCCATTACTATCGCGTCTCACATGCTTGTCGCCGTCGTCGTCGTCGATCGATCAATCACCACTGCTGCTGCTGCAGCATGCATGATCACATGCATGTGTAAATTAGTAGTACAAGATGTAGGAGACTACCTGATTACTAGTACCATTTATTATTGCTGTTGTACGTTACCGCATGCTAGCTCGTACGTACGTGGCTGCTCCGAGCTTTTGTTGGACTCGCAGCCCGTACGTGCATGCGCGTTTCATTCGACCGTAGGCTTGTACTGTACTGTACACATTTCCTTCTATTCTACCCCCCTGTTCAATGCAGTA     ]
[+] EMBL AK070458             [  CCATTGCAAGAAACCCTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACTGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTATCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACCA CCACCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCCGGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCGCCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATCGCGGCGCTGCAGCCGGTGGAGATCGACCCGGAGGCCGTGCGGCCGCCGAAGCGGCGCAACGTGCGCATCTCCAAGGACCCGCAGAGCGTGGCGGCGCGGCTGCGGCGGGAGCGCATCAGCGAGCGCATCCGCATCCTGCAGCGGCTCGTCCCGGGCGGCACCAAGATGGACACCGCCTCCATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGTCCCAGGTGCAGTCCCTCGAGCGCGCCGCCGCCGCCACCGGCGCCGCCGCCCACCGCGCCGCCGCATTCGGCGCCGCCTACCCAGCTGCCTTACCCATGCAGCACCACGCTCCGTGGTAGCTGCACGCTACTAGCTCCCACATGGATAGATGGTGATGAGACAATCGTTTCCCATTACTATCGCGTCTCACATGCTTGTCGCCGTCGTCGTCGTCGATCGATCAATCACCACTGCTGCTGCTGCAGCATGCATGATCACATGCATGTGCAAATTAGTAGTACAAGATGTAGGAGACTACCTGATTACTAGTACCATTTATTATTGCTGTTGTACGTTACCGCATGCTAGCTCGTACGTACGTGGCTGCTCCGAGCTTTTGTTGGACTCGCAGCCCGTACGTGCATGCGCGTTTCATTCGACCGTAGGCTTGTACTGTACTGTACACATTTCCTTCTATTCTACCCCCCTGTTCAATGCAGTACGTTT]
[+] EMBL CF304883             [             AACCCTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACTGCGCTCAGTGACCAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB652841             [                 CTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACCGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTATCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACCA CCACCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCCGGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCGCCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATCGCGGCGCTGCAGCCGGTGGAGATCGACCCGGAGGCCGTGCGGCCGCCGAAGCGGCGCAACGTGCGCATCTCCAAGGACCCGCAGAGCGTGGCGGCGCGGCTGCGGCGGGAGCGCATCAGCGAGCGCATCCGCATCCTGCAGCGGCTCGTCCCGGGCGGCACCAAGATGGACACCGCCTCCATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGTCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AU071086             [                                      taACTACTCCTGCTAGCTAGCTCAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATACCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGACTTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAGCAGCTCACTGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTATCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACCANCCANCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCCGGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCGCCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATCGCGGCGCTGCAGCCGGTGGAGATCGACCCGGACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_8039#0 TACCATTGCAAGAAACCCTTCACATCTTACTGAAACAGCTACTACTCCTGCTAGCTAGCT CAAGCTCAAGCTCAATCTCAAGCTCTTTCCACTAAGCTCCGTGTGTCTAGCTCATCAATA CCTGGCTAGCTAGCTAGTTGCTTGATCGATATATATCCTAGCTAAGTGATGGACTTCGAC TTGTTCAATTCCTACCCGGAATCGCAGCTTGACCTGATGAGCACGATGCTTCAGCTGGAG CAGCTCACTGCGCTCAGTGACCAGTCGCTGTTCATGGCGGCGCCGACGTCGCCGCCGGTA TCACCCATGGGGACCCCTTCTCCCCAGTTCTCACCACCGCCGCAGATGTCGGTCACCACC ACCACCGCCGGTGGCGGTTACCAGGATCAGTATAACTCCATGCCGGCAACGTACGGCGCC GGTGCGGGCGTGCACCAGCTGGACTTCGCGATGTCGTCACCGGGCTCCGACTCCGGCGCG CCGCAGGGCTCGTCGTCGTCGTCCTCGTCGGAGGCGATGCGGGAGATGATCTTCCACATC GCGGCGCTGCAGCCGGTGGAGATCGACCCGGAGGCCGTGCGGCCGCCGAAGCGGCGCAAC GTGCGCATCTCCAAGGACCCGCAGAGCGTGGCGGCGCGGCTGCGGCGGGAGCGCATCAGC GAGCGCATCCGCATCCTGCAGCGGCTCGTCCCGGGCGGCACCAAGATGGACACCGCCTCC ATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGTCCCAGGTGCAGTCCCTCGAG CGCGCCGCCGCCGCCACCGGCGCCGCCGCCCACCGCGCCGCCGCATTCGGCGCCGCCTAC CCAGCTGCCTTACCCATGCAGCACCACGCTCCGTGGTAGCTGCACGCTACTAGCTCCCAC ATGGATAGATGGTGATGAGACAATCGTTTCCCATTACTATCGCGTCTCACATGCTTGTCG CCGTCGTCGTCGTCGATCGATCAATCACCACTGCTGCTGCTGCAGCATGCATGATCACAT GCATGTGTAAATTAGTAGTACAAGATGTAGGAGACTACCTGATTACTAGTACCATTTATT ATTGCTGTTGTACGTTACCGCATGCTAGCTCGTACGTACGTGGCTGCTCCGAGCTTTTGT TGGACTCGCAGCCCGTACGTGCATGCGCGTTTCATTCGACCGTAGGCTTGTACTGTACTG TACACATTTCCTTCTATTCTACCCCCCTGTTCAATGCAGTACGTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)