These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 475 fasta sequence [CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGATGGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGCTCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTGATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAAATTA] [+] EMBL AU083570 [CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGATGGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGCTCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTGATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAA ] [+] EMBL AU076295 [ CGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAA ] [+] EMBL AK062689 [ AAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTTTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAGATTA] consensusID : consensus_8042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 337 fasta sequence [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTCGGCAAGTTAAAAATTCTGGGANTACAGTAG-CGCAGAGCCCATACATTAGGGCTTATTNCGCGCTGTAGAG] [+] EMBL AU083569 [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTCGGCAAGTTAAAAATTCTGGGANTACAGTAG CGCAGAGCCCATACATTAGGGCTTATTNCGC ] [+] EMBL AU076296 [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGA AAA TGG GTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAG GAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTC GCAAG TAAAAA TCT GGA TACAGTAGCCGCAGGGCCCATACA TAGGGCTTATT CGCGCTGTAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8042#0 CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGAT 60 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 GGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGC 120 consensus_8042#1 ------------------------------------------------AAATTCTCGGGA 12 * * ** consensus_8042#0 TCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTG 180 consensus_8042#1 ACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGA 72 **** * * * * ** * * * * * ** * * * consensus_8042#0 ATGCTGTGACCTATGAGAG-CCCAAATT-ATTTATCAGATGCGGAAAGCACAAATTCTTT 238 consensus_8042#1 AAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAAC 132 * * * * * ** * ****** * * ** * ** * * * ** * consensus_8042#0 AGGACCA-----GTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATA 293 consensus_8042#1 GAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAG-A 191 ** * * * *** ** * * *** * * **** * * * consensus_8042#0 ATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCG 353 consensus_8042#1 GGGAGCATAAAAATATGTATTTGCTAT--GGGACTC-CGGTTTGATAAAAGTATAGAGCA 248 * * ** * * * *** * * ** * * ** * ** ** ** consensus_8042#0 GTAACTGTAGTTTTTTTACTACTTCGAGTTTATT-TTCTATATATATGGGTCCGTGCAGC 412 consensus_8042#1 GGAAATAGAGGATTTTTTCGG---CAAGTTAAAAATTCTGGGANTACAGTAGCGCAGAGC 305 * ** * ** ***** * * **** * **** ** * ** *** consensus_8042#0 ATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAAA 472 consensus_8042#1 CCATACATTAGGGC-TTATTNCGCGCTGTAGAG--------------------------- 337 * ** * * **** * * * consensus_8042#0 TTA 475 consensus_8042#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||