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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1013 fasta sequence
[TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGAAAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCCTTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATCAAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATCTGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGNTCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTCGCTGTCGGAGCCTGGAGGGTACATCTTATCTTGCATGGAGAAACTAACACAAAAAAAGG]
[+] EMBL C28569 [TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGAAAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCCTTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATCAAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATCTGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGN ]
[-] EMBL CB681760 [ ATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTCGCTGTCGGAGCCTGGAGGGTACATCTTATCTTGCATGGAGAAACTAACACAAAAAAAGG]
consensusID : consensus_8048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence
[CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGNTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTTCGCTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNCGGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT]
[+] EMBL CA764242 [CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGNTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTTCGCTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNCGGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT]
[+] EMBL AU063440 [ GCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTA TTTTTCGCTGTCGGAGCCTGGTTTGTACATCTTATC TTGCATGGAGAAACTAGAGCTACAGTTGCCGGCAaaaaaa ]
consensusID : consensus_8048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAAGGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGGCCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTCGGATCCGGCCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTATTGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTGG]
[-] EMBL CB681759 [TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAAGGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGGCCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTCGGATCCGGCCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTATTGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8048#0 TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGA 60
consensus_8048#1 ------------------------------------------------------------
consensus_8048#2 ------------------------------------------------------------
consensus_8048#0 AAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCC 120
consensus_8048#1 ------------------------------------------------------------
consensus_8048#2 ------------------------------------------------------------
consensus_8048#0 TTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATC 180
consensus_8048#1 ------------------------------------------------------------
consensus_8048#2 ------------------------------------------------------------
consensus_8048#0 AAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATC 240
consensus_8048#1 ------------------------------------------------------------
consensus_8048#2 ------------------------------------------------------------
consensus_8048#0 TGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 300
consensus_8048#1 ------CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 54
consensus_8048#2 -------------TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 47
******************************************
consensus_8048#0 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 360
consensus_8048#1 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 114
consensus_8048#2 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 107
************************************************************
consensus_8048#0 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 420
consensus_8048#1 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 174
consensus_8048#2 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 167
************************************************************
consensus_8048#0 TGTTGAAATCGGTGACAAGGNTCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 480
consensus_8048#1 TGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 234
consensus_8048#2 TGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 227
******************** ***************************************
consensus_8048#0 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 540
consensus_8048#1 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 294
consensus_8048#2 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 287
************************************************************
consensus_8048#0 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 600
consensus_8048#1 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 354
consensus_8048#2 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 347
************************************************************
consensus_8048#0 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 660
consensus_8048#1 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 414
consensus_8048#2 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 407
************************************************************
consensus_8048#0 CGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGA 720
consensus_8048#1 CGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGA 474
consensus_8048#2 GGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGA 467
*** ****************************************** ************
consensus_8048#0 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGG 780
consensus_8048#1 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGG 534
consensus_8048#2 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGG 527
********************************** * * * * * * **
consensus_8048#0 CCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATAT 840
consensus_8048#1 CCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATAT 594
consensus_8048#2 CCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTC 587
*** ** ** * * ** * ** * * * ** * * * ** *
consensus_8048#0 GGTGTAAAAACTGCATCGCTATGACACCTCTATGGA---TCAAAGAGAGTGGTTTGTACA 897
consensus_8048#1 GGTGTAAAAACTGCATCGCTATGACACCTCTATGGA---TCAAAGAGAGTGGNTTGTACA 651
consensus_8048#2 GGATCCGG--CCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTAT--- 642
** * * ***** * ** ** **** *** * *
consensus_8048#0 TCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAA-ACTTGCTAAGCAAACTATTTTT-CG 955
consensus_8048#1 TCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAA-ACTTGCTAAGCAAACTATTTTTTCG 710
consensus_8048#2 ----TGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTG 698
* *** * * * * ** *** **** * * * * *
consensus_8048#0 CTGTCGGAGCCTGGAGGGTACATCTTATCTT-GCATGGAGAAACTAACACAAAAAAAGG- 1013
consensus_8048#1 CTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNC 770
consensus_8048#2 G----------------------------------------------------------- 699
consensus_8048#0 ----------------------------------------------------
consensus_8048#1 GGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT 822
consensus_8048#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||