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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 805 cluster # 805       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_805#0 length = 622 sequences # 1  
consensus_805#1 length = 474 sequences # 1  

consensusID : consensus_805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence
                              [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA]

[+] EMBL BQ907888             [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA]


>consensus_805#0 GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCA ACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGA CAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAA GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG GTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGA TAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG CTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGG TGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGC TGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACT TGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAA ATGGTTGTGGTTTAAAAAAAAA



consensusID : consensus_805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence
                              [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA]

[+] EMBL BI812419             [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA]


>consensus_805#1 CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCC ACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCA TAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGG TCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAG GTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACT TGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTG CTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTG CTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_805#0      GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCA 60
consensus_805#1      -----------------------------------CAATTACCCCAAACGGTCGCTCT-- 23
                                                        * *    * * *  ** *** **  

consensus_805#0      ACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGA 120
consensus_805#1      ----TACATCATCGAGGTCCACTGCTCTACT--GCATGGAC-CCACGTCAAC-CTGGGGA 75
                         ***  ** **  *  * ** *   *    ******** ********** *******

consensus_805#0      CAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAA 180
consensus_805#1      CAATGCGCA-CAGACGGCCCAGCACTGGGCG-CGGTGCGCAGAGCCATAGCTGCGGCGAA 133
                     ********* ********************* ****************************

consensus_805#0      GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 240
consensus_805#1      GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 193
                     ************************************************************

consensus_805#0      GTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGA 300
consensus_805#1      G----------------------------------------------------------- 194
                     *                                                           

consensus_805#0      TAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 360
consensus_805#1      ----------AATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 244
                               **************************************************

consensus_805#0      CTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGG 420
consensus_805#1      CTCGTGTTAGTGTAGTTGAACTTCCAG-CCGTCATCCCCTTTTGGTACTTCCGAACTTGG 303
                     *************************** ******** ************** ********

consensus_805#0      TGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGC 480
consensus_805#1      TGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGC-TGCTAGAACTTGGTGCTA-CTGC 361
                     *********** ************************ ****************** ****

consensus_805#0      TGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACT 540
consensus_805#1      TG-TTGCTT-CAGGTTGGCGCTTTTGTATGGAAC-ATGTTGGAAACTAAATTCTGGAACT 418
                     ** ****** ***********************  *************************

consensus_805#0      TGCTTTTGTATGG-CTGGAAA-TTAATTATGGCTGGAATGTGATTATAATATAATTATGC 598
consensus_805#1      TGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATT-TAAAAAAAAAA--- 474
                     ************* ******* *********************** *** * **  *   

consensus_805#0      AAATGGTTGTGGTTTAAAAAAAAA 622
consensus_805#1      ------------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)