These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA] [+] EMBL BQ907888 [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA] consensusID : consensus_805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA] [+] EMBL BI812419 [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_805#0 GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCA 60 consensus_805#1 -----------------------------------CAATTACCCCAAACGGTCGCTCT-- 23 * * * * * ** *** ** consensus_805#0 ACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGA 120 consensus_805#1 ----TACATCATCGAGGTCCACTGCTCTACT--GCATGGAC-CCACGTCAAC-CTGGGGA 75 *** ** ** * * ** * * ******** ********** ******* consensus_805#0 CAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAA 180 consensus_805#1 CAATGCGCA-CAGACGGCCCAGCACTGGGCG-CGGTGCGCAGAGCCATAGCTGCGGCGAA 133 ********* ********************* **************************** consensus_805#0 GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 240 consensus_805#1 GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 193 ************************************************************ consensus_805#0 GTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGA 300 consensus_805#1 G----------------------------------------------------------- 194 * consensus_805#0 TAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 360 consensus_805#1 ----------AATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 244 ************************************************** consensus_805#0 CTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGG 420 consensus_805#1 CTCGTGTTAGTGTAGTTGAACTTCCAG-CCGTCATCCCCTTTTGGTACTTCCGAACTTGG 303 *************************** ******** ************** ******** consensus_805#0 TGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGC 480 consensus_805#1 TGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGC-TGCTAGAACTTGGTGCTA-CTGC 361 *********** ************************ ****************** **** consensus_805#0 TGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACT 540 consensus_805#1 TG-TTGCTT-CAGGTTGGCGCTTTTGTATGGAAC-ATGTTGGAAACTAAATTCTGGAACT 418 ** ****** *********************** ************************* consensus_805#0 TGCTTTTGTATGG-CTGGAAA-TTAATTATGGCTGGAATGTGATTATAATATAATTATGC 598 consensus_805#1 TGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATT-TAAAAAAAAAA--- 474 ************* ******* *********************** *** * ** * consensus_805#0 AAATGGTTGTGGTTTAAAAAAAAA 622 consensus_805#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||