These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 735 fasta sequence [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG-TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT-AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK120222 [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTT ] [-] EMBL CB627621 [ AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTAAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAAGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCAAGGATATTTTTTTTTGTAGTGAATGTACCAAGGTTTT ] [-] EMBL CB636369 [ GGAAGCAGCATGGCTGCCCCATAGCAACTGAACATGACGCCCTTCCCGTTCGCACTAACGATGGCCGGTTTTTTTTTTTTCGGCCAGCAGGCCCGCCCAGTGGCAAGTTATGTCTGCTGTAAAGAACTAACACTACCAGCAAAGCTAACATCATTCG TTTTTTCCTTCGTTTTTTATGTAACTTGTCCATTCTTTCT AACCCCACTGGCCAAGTGCAGCCAATGCTTCAGTAGTAGAGCCTCCTAGTATGGTAGTAGGTAGGTAGGAATTGTACAAATAGGAACAGGCAAAGGGTAGGGAAACCATCTGGGGCGGAGAAATTGTATCTGGGATGTATACAAGATGTAAACATGCGTGTGCTTCACGAA ATTTTTTTTTGTAGTGAATGAACCAAGGTTTTCATTATTAG ] [+] EMBL CF332377 [ TATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC] [+] EMBL CF195911 [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8050#0 AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 60 consensus_8050#1 -AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 59 *********************************************************** consensus_8050#0 CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 120 consensus_8050#1 CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 119 ************************************************************ consensus_8050#0 CCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 180 consensus_8050#1 CCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 179 ** ********************************************************* consensus_8050#0 CGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 240 consensus_8050#1 CGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 239 ************ *********************************************** consensus_8050#0 TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 300 consensus_8050#1 TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 299 ************************************************************ consensus_8050#0 TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 360 consensus_8050#1 TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 359 ************************************************************ consensus_8050#0 CACTAACAGCAAAGCTAACATCATTCGTTTTTT-CCTTTGTTTTTTATGTTACTTGTCCA 419 consensus_8050#1 CACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCA 419 ********************************* ************************** consensus_8050#0 TTCTTTCTAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTAT 479 consensus_8050#1 TTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC------- 472 ********* *** ***** ************** *** consensus_8050#0 CGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTG 539 consensus_8050#1 ------------------------------------------------------------ consensus_8050#0 GGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAAT 599 consensus_8050#1 ------------------------------------------------------------ consensus_8050#0 ATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCC 659 consensus_8050#1 ------------------------------------------------------------ consensus_8050#0 ATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 719 consensus_8050#1 ------------------------------------------------------------ consensus_8050#0 AAAAAAAAAAAAAAAA 735 consensus_8050#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||