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Oryza sativa
cluster # 8050 cluster # 8050       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8050#0 length = 735 sequences # 4  
consensus_8050#1 length = 472 sequences # 1  

consensusID : consensus_8050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 735
fasta sequence
                              [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG-TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT-AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120222             [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTT                                                                                ]
[-] EMBL CB627621             [ AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTAAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAAGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCAAGGATATTTTTTTTTGTAGTGAATGTACCAAGGTTTT                                                                                                        ]
[-] EMBL CB636369             [                                                                                                                                                                                                                                      GGAAGCAGCATGGCTGCCCCATAGCAACTGAACATGACGCCCTTCCCGTTCGCACTAACGATGGCCGGTTTTTTTTTTTTCGGCCAGCAGGCCCGCCCAGTGGCAAGTTATGTCTGCTGTAAAGAACTAACACTACCAGCAAAGCTAACATCATTCG TTTTTTCCTTCGTTTTTTATGTAACTTGTCCATTCTTTCT AACCCCACTGGCCAAGTGCAGCCAATGCTTCAGTAGTAGAGCCTCCTAGTATGGTAGTAGGTAGGTAGGAATTGTACAAATAGGAACAGGCAAAGGGTAGGGAAACCATCTGGGGCGGAGAAATTGTATCTGGGATGTATACAAGATGTAAACATGCGTGTGCTTCACGAA ATTTTTTTTTGTAGTGAATGAACCAAGGTTTTCATTATTAG                                                                                               ]
[+] EMBL CF332377             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8050#0 AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT CCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT CGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA CACTAACAGCAAAGCTAACATCATTCGTTTTTTCCTTTGTTTTTTATGTTACTTGTCCAT TCTTTCTAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATC GTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGG GGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATA TTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCA TGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA



consensusID : consensus_8050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence
                              [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC]

[+] EMBL CF195911             [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC]


>consensus_8050#1 AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAAC AAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTC CCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTC GATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCAT GGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTT TTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAAC ACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCAT TCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8050#0      AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 60
consensus_8050#1      -AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 59
                       ***********************************************************

consensus_8050#0      CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 120
consensus_8050#1      CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 119
                      ************************************************************

consensus_8050#0      CCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 180
consensus_8050#1      CCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 179
                      ** *********************************************************

consensus_8050#0      CGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 240
consensus_8050#1      CGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 239
                      ************ ***********************************************

consensus_8050#0      TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 300
consensus_8050#1      TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 299
                      ************************************************************

consensus_8050#0      TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 360
consensus_8050#1      TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 359
                      ************************************************************

consensus_8050#0      CACTAACAGCAAAGCTAACATCATTCGTTTTTT-CCTTTGTTTTTTATGTTACTTGTCCA 419
consensus_8050#1      CACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCA 419
                      ********************************* **************************

consensus_8050#0      TTCTTTCTAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTAT 479
consensus_8050#1      TTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC------- 472
                      *********     *** ***** **************            ***       

consensus_8050#0      CGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTG 539
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      GGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAAT 599
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      ATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCC 659
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      ATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 719
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      AAAAAAAAAAAAAAAA 735
consensus_8050#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)