These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 848 fasta sequence [CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATGGCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGTCCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCACGACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAAACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTTCACGTTTCAGCAACATAATAACCGTTCT] [+] EMBL AK120178 [CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATGGCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGTCCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCACGACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAAACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGA ] [-] EMBL CB685111 [ ATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTTCA ] [+] EMBL CB685110 [ ccTCTGGGCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTGCACGTTTCAGCAACATAATAACCGTTCT] [+] EMBL CA753326 [ GGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTAaaaaaaa ] consensusID : consensus_8052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TATGTTCTGTGCCTAATCAGGCATCAGGTCCACAATGCTTACACCAACGGACTCGCTTCGGGATATGATGACAACCTCTGTATGCCGGAATTGCAACGGTAGCGGTCTGTATTATGTGACATGTTCGCGGCACTGGAAAATGGAAGGCCCNCATACCGAAAGAGACAAGATGTCTATCTATTCCCACGAGTGCCCACTGCTACGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCCAACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAACGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGCCTTTGCTGCCTGTAGTTGCAATCACGTTCTGAAACTTAATAGATTCATGCACCCGGAGCTTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNNCGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA] [+] EMBL BI806138 [TATGTTCTGTGCCTAATCAGGCATCAGGTCCACAATGCTTACACCAACGGACTCGCTTCGGGATATGATGACAACCTCTGTATGCCGGAATTGCAACGGTAGCGGTCTGTATTATGTGACATGTTCGCGGCACTGGAAAATGGAAGGCCCNCATACCGAAAGAGACAAGATGTCTATCTATTCCCACGAGTGCCCACTGCTACGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCCAACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAACGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGCCTTTGCTGCCTGTAGTTGCAATCACGTTCTGAAACTTAATAGATTCATGCACCCGGAGCTTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNNCGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8052#0 CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATG 60 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 GCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGT 120 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 CCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCAC 180 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 GACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAA 240 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 ACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCA 300 consensus_8052#1 ----------------------------------TATGTTCTGTGCC--TAATCAG-GCA 23 ***** ***** * ******* *** consensus_8052#0 TCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGG-ATATGATGAGCAAGCCTGC 359 consensus_8052#1 TCAGGTCCA-CAATGCTTACACCAA-CGGACTCGCTTCGGGATATGATGAC--AACCT-C 78 ********* *************** ************** ********* * *** * consensus_8052#0 TGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGG 419 consensus_8052#1 TGTATGCCGGAATTGCAACGGTAGCGGT-CTGTATTATGTGACATGTTCG-CGGCACTGG 136 **************************** ****************** ** ********* consensus_8052#0 AAAATGGAAGGCCCTCA-ACCGAAAGAGAGCAAAAGATGTCTATCTATTCACA-GAGTGC 477 consensus_8052#1 AAAATGGAAGGCCCNCATACCGAAAGAGA---CAAGATGTCTATCTATTCCCACGAGTGC 193 ************** ** *********** ***************** ** ****** consensus_8052#0 CCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCA 537 consensus_8052#1 CCA--CTGCTACG-CCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCC 250 *** ******** ********************************************* consensus_8052#0 AACAACAAGGGGCTTCTCCGGCGACCAGACGCCA-AGAAGCTGCTCGACAAGATGTACAA 596 consensus_8052#1 AACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAA 310 ********************************** ************** ********** consensus_8052#0 CGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAAT 656 consensus_8052#1 CGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAAT 370 **** ******************************************************* consensus_8052#0 TGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCT--CAACATTCTCTCC 714 consensus_8052#1 TGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGC 430 ******************************************* **** * ** * consensus_8052#0 TTTCTC---CTGTAGTTCAAATCAACGTTCT-AAACTTAATAGATTCAT-CACA-GGAGC 768 consensus_8052#1 CTTTGCTGCCTGTAGTTGCAATCA-CGTTCTGAAACTTAATAGATTCATGCACCCGGAGC 489 ** * ******** ***** ****** ***************** *** ***** consensus_8052#0 ATTACATTATTTATTATTT--CATCTCAATCATAAGAGCATTGT-AGCAATTTTT---CA 822 consensus_8052#1 TTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNN 549 * ** * ******* * ****** *********** **** *** **** * consensus_8052#0 CGTTTCAGCAACATAAT--AACCGTTCT-------------- 848 consensus_8052#1 CGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA 591 ************** * ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||