These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2616 fasta sequence [CTGGCGGTGCGCTTCGGCTTCCGCCGCTTGCGAGTTGGTGGCTCGCCCCCTCTCGCTCTCAACTCTCTCTCTCCCCCGAAATTCCGAATCCGATCGAGACGAATCGAGAGAGAGAGAGGCGCCGCGGATCCGGGTGAATGCTTCAGTGATTAATCTGGCCGGCACAAGATGTCATTGCACATTGGGCGGCTCAGTTCACATGTGCGTCAAAGATATCTTGAACATCTTTTCCAGAGGTTTGGAAATTGCACAGTGAGGCTGAAAGATGGATATGGATTTGCGGTCTTTGATTCTAATGATGATGCAGCTCGAGCCATGCGGGCACTGCAGGGGAAATTTGTTTGTGGGGAGCGCATTACTGTTAATTGGTCAAAACAGCAGCCCAGATTTTCTAAGGATTTCAGAAGTTCAAGAAACATTGAGTCATCTCACCAGAGGGCACCCAGAGTCAGAGATGGTAATATTAGGTTCAGGGATTCTTTAGCTCAGAAGAATCACCCTGCAAGTCATGATCAGGGTCACAGTCCTGATGTTGCACCAGAACAGAAATCATCTGATGGTGCATTGGAAAAGAAATCTGATGAAAAGAAATCTGATGGTGATGTTGAGGGTTTGAAGGATGTGAGGGAAACTGTTGGTCAAGATCCAGTGGAGATGAAGAGGAATGAAGATGTTACAAGTGATGCAAATGTAATTGAACATGATAGATGGGAGGAAACTGGAAAAGGGAATCCTGGTAGAGATGATGATGATTTTGACCGTTATGAACCTTATCATGGCTATGCCAGGCAAGAAGAAAGAGCAGAGGTTGTCAAAGCAAGTTCTCAGGAGACTTATCATCATAGATTTTCTTCACAGAAGTCGAAAGAGTATCCTGCTGGCCATACTGCTCATGATTGCCCCCAGAAAACAGATGGAGGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAGGCTGAGAAGATTTGGGTCTCCCTCAAGGAGGCAACCAGATACTCGTGATTGCTCTAAGAAAACAGATGACAGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAAAGGTATGGTGAGGCTGAAAAGATTTGGGTCTCCCTCGAGGAAGCGGACAGAAGAATTTCGTGTTGATAAGGTGGTAGAAACACATCGTATGGTACAAGATGGCAGGAAACAATTTTCTGATAGGACTAGCCACGCTCACAGATTGAGTAATGTTTCTAGAGAGGACAAAAGGCATACCCGTTGCAGTGAAAGTATACCACAGACCCCCAAGGAGTCACGCAAGAGAAGCAGATCTAAAAGATCCCGTGGGTCATCCCTCTCTTCTGACAGGAGTACCTCACATTCAACATCTAAATGTTCTCGTTCAAGAGCACATTCCCCATCTCATTCTGCACATTCTAGTTCAAAATCATTTCAGCCAACTCAGCCTGAAGGTTTAAGATCAATGGCAGTATCAAATGTCAGTCCATTGCTGGTGTCTGGTTCACCACAACACAACTTACCATCCACAGCGGAAAACAAGAACTCAGATTTTCTGGTGAATTCTCCTTTGGAGGGCAATTTAGATTCCAAAACAACAACTGGACTCAAGCATACACGTGGTTACCAGCAAGATATCAAAGATTCAAGATTGAGTGGAGAGTCTCCAGTTATTCCACTCAGGTTGAAAATCCAAAGGAATGGTGAATTGCCTGTATCTGGTAAAGATGCTTATCTGGATGGTTACACAGAGACCAACTTGAATAATAACTTGGTTTATGATGACAATGTTGCTGATGGTGTGCAAGTTCAGAAGACCAATTCTGAGGACGCTTCATCAGTGAAGTCAAGCAAGGATATTCTGGTGAAAAGTGAGAGGAGCAACTCTTTGAAGCTAACAACAAATGAAGTGGTCTCTGCTCTTAAGCACAATGGAATGGAAGCACGTGGTACAGATTTATTGAACCAACCTGT-AGA-GAAGTACTTT-GGTGCTGCACGCCTATGG-CCAT-GGGAAGTC-ATTTATTAT-CGGAAGCTT-AAAAAGGGTCC-AATTT-CTAC-AGAGAA-CTACGCTAAGCGAC-TTGAGCAGAACAAAGAATATAGTATTGTAGATCGGTATGTCAGAAGCAGCAGTGGTTGGTGGGAGTGCCACTAGAAT-GCCAGACTGGTGGTATAGATAGATGCAGTTGAGGCTTTGCGTGTATGCTGCTGCAGGTACATTTTGAGGATGACAAGGTTTGCCTTCTAATCAGTCCATTCCTAGAGCTCCATGAGTGTAAGCAGACCCTTAACTATGAGAATTATTAAGTATTAGGTTCTTTCATTAGTATAATTTTGTTGAGTAAGGGTTTGCACAATTGCACCTAAGTAGCTTATTCTGCCACCAATATTATGCTGTTGCATGGTCAGTATGTTTTAAGTTGTAATGTTTCAACGACTCGCCCCAGTGAGGTACTTTGGATGGCCAACAGGTAAGCAAAGATGCTTATTTTATACATGATTTTTTGGGGAAAAGAAACAAGCCTCTTGTTTAGCAGTTATATAGAGGAAAGGTTCTCTCTGTAGTTTATGATTTCCTTAGTACTCCCTCCCTCTGGTTTCATAATTCTTGACATTTTGGACAATGATATGG] [+] EMBL AK120158 [CTGGCGGTGCGCTTCGGCTTCCGCCGCTTGCGAGTTGGTGGCTCGCCCCCTCTCGCTCTCAACTCTCTCTCTCCCCCGAAATTCCGAATCCGATCGAGACGAATCGAGAGAGAGAGAGGCGCCGCGGATCCGGGTGAATGCTTCAGTGATTAATCTGGCCGGCACAAGATGTCATTGCACATTGGGCGGCTCAGTTCACATGTGCGTCAAAGATATCTTGAACATCTTTTCCAGAGGTTTGGAAATTGCACAGTGAGGCTGAAAGATGGATATGGATTTGCGGTCTTTGATTCTAATGATGATGCAGCTCGAGCCATGCGGGCACTGCAGGGGAAATTTGTTTGTGGGGAGCGCATTACTGTTAATTGGTCAAAACAGCAGCCCAGATTTTCTAAGGATTTCAGAAGTTCAAGAAACATTGAGTCATCTCACCAGAGGGCACCCAGAGTCAGAGATGGTAATATTAGGTTCAGGGATTCTTTAGCTCAGAAGAATCACCCTGCAAGTCATGATCAGGGTCACAGTCCTGATGTTGCACCAGAACAGAAATCATCTGATGGTGCATTGGAAAAGAAATCTGATGAAAAGAAATCTGATGGTGATGTTGAGGGTTTGAAGGATGTGAGGGAAACTGTTGGTCAAGATCCAGTGGAGATGAAGAGGAATGAAGATGTTACAAGTGATGCAAATGTAATTGAACATGATAGATGGGAGGAAACTGGAAAAGGGAATCCTGGTAGAGATGATGATGATTTTGACCGTTATGAACCTTATCATGGCTATGCCAGGCAAGAAGAAAGAGCAGAGGTTGTCAAAGCAAGTTCTCAGGAGACTTATCATCATAGATTTTCTTCACAGAAGTCGAAAGAGTATCCTGCTGGCCATACTGCTCATGATTGCCCCCAGAAAACAGATGGAGGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAGGCTGAGAAGATTTGGGTCTCCCTCAAGGAGGCAACCAGATACTCGTGATTGCTCTAAGAAAACAGATGACAGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAAAGGTATGGTGAGGCTGAAAAGATTTGGGTCTCCCTCGAGGAAGCGGACAGAAGAATTTCGTGTTGATAAGGTGGTAGAAACACATCGTATGGTACAAGATGGCAGGAAACAATTTTCTGATAGGACTAGCCACGCTCACAGATTGAGTAATGTTTCTAGAGAGGACAGAAGGCATACCCGTTGCAGTGAAAGTATACCACAGACCCCCAAGGAGTCACGCAAGAGAAGCAGATCTAAAAGATCCCGTGGGTCATCCCTCTCTTCTGACAGGAGTACCTCACATTCAACATCTAAATGTTCTCGTTCAAGAGCACATTCCCCATCTCATTCTGCACATTCTAGTTCAAAATCATTTCAGCCAACTCAGCCTGAAGGTTTAAGATCAATGGCAGTATCAAATGTCAGTCCATTGCTGGTGTCTGGTTCACCACAACACAACTTACCATCCACAGCGGAAAACAAGAACTCAGATTTTCTGGTGAATTCTCCTTTGGAGGGCAATTTAGATTCCAAAACAACAACTGGACTCAAGCATACACGTGGTTACCAGCAAGATATCATAGATTCAAGATTGAGTGGAGAGTCTCCAGTTATTCCACTCAGGTTGAAAATCCAAAGGAATGGTGAATTGCCTGTATCTGGTAAAGATGCTTATCTGGATGGTTACACAGAGACCAACTTGAATAATAACTTGGTTTATGATGACAATGTTGCTGATGGTGTGCAAGTTCAGAAGACCAATTCTGAGGACGCTTCATCAGTGAAGTCAAGCAAGGATATTCTGGTGAAAAGTGAGAGGAGCAACTCTTTGAAGCTAACAACAAATGAAGTGGTCTCTGCTCTTAAGCACAATGGAATGGAAGCACGTGGTACAGATTTATTGAACCAACCTGT AGA GAAGTACTTT GGTGCTGCACGCCTATGG CCAT GGGAAGTC ATTTATTAT CGGAAGCTT AAAAAGGGTCC AATTT CTAC AGAGAA CTACGCTAAGCGAC TTGAGCAGAACAAAGAATATAGTATTGTAGATCGGTATGTCAGAAGCAGCAGTGGTTGGTGGGAGTGCCACTAGAAT GCCAGACTGGTGGTATAGATAGATGCAGATGAGGCTTTGCGTGTATGCTGCTGCAGGTACATTTTGAGGATGACAAGGTTTGCCTTCTAATCAGTCCATTCCTAGAGCTCCATGAGTGTAAGCAGACCCTTAACTATGAGAATTATTAAGTATTAGGTTCTTTCATTAGTATAATTTTGTTGAGTAAGGGTTTGCACAATTGCACCTAAGTAGCTTATTCTGCCACCAATATTATGCTGTTGCATGGTCAGTATGTTTTAAGTTGTAATGTTTCAACGACTCGCCCCAGTGAGGTACTTTGGATGGCCAACAGGTAAGCAAAGATGCTTATTTTATACATGATTTTTTGGGGAAAAGAAACAAGCCTCTTGTTTAGCAGTTATATAGAGGAAAGGTTCTCTCTGTAGTTTATGATTTCCTTAGTACTCCCTCCCTCTGGTTTCATAATTCTTGACATTTTGGACAATGATATGG] [+] EMBL AK100595 [CTGGCGGTGCGCTTCGGCTTCCGCCGCTTGCGAGTTGGTGGCTCGCCCCCTCTCGCTCTCAACTCTCTCTCTCCCCCGAAATTCCGAATCCGATCGAGACGAATAGGGAGAGAGAGAGGCGCCGCGGATCCGGGTGAATGCTTCAGTGATTAATCTGGCCGGCACAAGATGTCATTGCACATTGGGCGGCTCAGTTCACATGTGCGTCAAAGATATCTTGAACATCTTTTCCAGAGGTTTGGAAATTGCACAGTGAGGCTGAAAGATGGATATGGATTTGCGGTCTTTGATTCTAATGATGATGCAGCTCGAGCCATGCGGGCACTGCAGGGGAAATTTGTTTGTGGGGAGCGCATTACTGTTAATTGGTCAAAACAGCAGCCCAGATTTTCTAAGGATTTCAGAAGTTCAAGAAACATTGAGTCATCTCACCAGAGGGCACCCAGAGTCAGAGATGGTAATATTAGGTTCAGGGATTCTTTAGCTCAGAAGAATCACCCTGCAAGTCATGATCAGGGTCACAGTCCTGATGTTGCACCAGAACAGAAATCATCTGATGGTGCATTGGAAAAGAAATCTGATGAAAAGAAATCTGATGGTGATGTTGAGGATTTGAAGGATGTGAGGGAAACTGTTGGTCAAGATCCAGTGGAGATGAAGAGGAATGAAGATGTTACAAGTGATGCAAATGTAATTGAACATGATAGATGGGAGGAAACTGGAAAAGGGAATCCTGGTAGAGATGATGATGATTTTGACCGTTATGAACCTTATCATGGCTATGCCAGGCAAGAAGAAAGAGCAGAGGTTGTCAAAGCAAGTTCTCAGGAGACTTATCATCATAGATTTTCTTCACAGAAGTCGAAAGAGTATCCTGCTGGCCATACTGCTCATGATTGCCCCCAGAAAACAGATGGAGGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAGGCTGAGAAGATTTGGGTCTCCCTCAAGGAGGCAACCAGATACTCGTGATTGCTCTAAGAAAACAGATGACAGATTCGAAGCATGGAGAGATGCATTGAGTAGGCAAGAAAAAGGTATGGTGAGGCTGAAAAGATTTGGGTCTCCCTCGAGGAAGCGGACAGAAGAATTTCGTGTTGATAAGGTGGTAGAAACACATCGTATGGTACAAGATGGCAGGAAACAATTTTCTGATAGGACTAGCCACGCTCACAGATTGAGTAATGTTTCTAGGGAGGACAAAAGGCATACCCGTTGCAGTGAAAGTATACCACAGACCCCCAAGGAGTCACGCAAGAGAAGCAGATCTAAAAGATCCCGTGGGTCATCCCTCTCTTCTGACAGGAGTACCTCACATTCAACATCTAAATGTTCTCGTTCAAGAGCACATTCCCCATCTCATTCTGCACATTCTAGTTCAAAATCATTTCAGCCAACTCAGCCTGAAGGTTTAAGATCAATGGCAGTATCAAATGTCAGTCCATTGCTGGTGTCTGGTTCACCACAACACAACTTACCATCCACAGCGGAAAACAAGAACTCAGATTTTCTGGTGAATTCTCCTTTGGAGGGCAATTTAGATTCCAAAACAACAACTGGACTCAAGCATACACGTGGTTACCAGCAAGATATCAAAGATTCAAGATTGAGTGGAGAGTCTCCAGTTATTCCACTCAGGTTGAAAATCCAAAGGAATGGTGAATTGCCTGTATCTGGTAAAGATGCTTATCTGGATGGTTACACAGAGACCAACTTGAATAATAACTTGGTTTATGATGACAATGTTGCTGATGGTGTGCAAGTTCAGAAGACCAATTCTGAGGACGCTTCATCAGTGAAGTCAAGCAAGGATATTCTGGTGAAAAGTGAGAGGAGCAACTCTTTGAAGCTAACAACAAATGAAGTGGTCTCTGCTCTTAAGCACAATGGAATGGAAGCACGTGGTACAGATTTATTGAACCAACCTGT AGA GAAGTACTTT GGTGCTGCACGCCTATGG CCAT GGGAAGTC ATTTATTAT CGGAAGCTT AAAAAGGGTCC AATTT CTAC AGAGAA CTACGCTAAGCGAC TTGAGCAGAACAAAGAATATAGTATTGTAGATCGGTATGTCAGAAGCAGCAGTGGTTGGTGGGAGTGCCACTAGAAT GCCAGACTGGTGGTATAGATAGATGCAGTTGAGGCTTTGCGTGTATGCTGCTGCAGGTACATTTTGAGGATGACAAGGTTTGCCTTCTAATCAGTCCATTCCTAGAGCTCCATGAGTGTAAGCAGACCCTTAACTATGAGAATTATTAAGTATTAGGTTCTTTCATTAGTATAATTTTGTTGAGTAAGGGTTTGCACAATTGCACCTAAGTAGCTTATTCTGCCACCAATATTATGCTGTTGCATGGTCAGTATGTTTTAAGTTGTAATGTTTCAACGACTCGCCCCAGTGAGGTACTTTGGATGGCCAACAGGTAAGCAAAGATGCTTATTTTATACATGATTTTTTGGGGAAAAGAAACAAGCCTCTTGTTTAGCAGTTATATAGAGGAAAGG ] [+] EMBL AK073126 [ AGAAGAATTTCGTGTTGATAAGGTGGTAGAAACACATCGTATGGTACAAGATGGCAGGAAACAATTTTCTGATAGGACTAGCCACGCTCACAGATTGAGTAATGTTTCTAGAGAGGACAAAAGGCATACCCGTTGCAGTGAAAGTATACCACAGACCCCCAAGGAGTCACGCAAGAGAAGCAGATCTAAAAGATCCCGTGGGTCATCCCTCTCTTCTGACAGGAGTACCTCACATTCAACATCTAAATGTTCTCGTTCAAGAGCACATTCCCCATCTCATTCTGCACATTCTAGTTCAAAATCATTTCAGCCAACTCAGCCTGAAGGTTTAAGATCAATGGCAGTATCAAATGTCAGTCCATTGCTGGTGTCTGGTTCACCACAACACAACTTACCATCCACAGCGGAAAACAAGAACTCAGATTTTCTGGTGAATTCTCCTTTGGAGGGCAATTTAGATTCCAAAACAACAACTGGACTCAAGCATACACGTGGTTACCAGCAAGATATCAAAGATTCAAGATTGAGTGGAGAGTCTCCAGTTATTCCACTCAGGTTGAAAATCCAAAGGAATGGTGAATTGCCTGTATCTGGTAAAGATGCTTATCTGGATGGTTACACAGAGACCAACTTGAATAATAACTTGGTTTATGATGACAATGTTGCTGATGGTGTGCAAGTTCAGAAGACCAATTCTGAGGACGCTTCATCAGTGAAGTCAAGCAAGGATATTCTGGTGAAAAGTGAGAGGAGCAACTCTTTGAAGCTAACAACAAATGAAGTGGTCTCTGCTCTTAAGCACAATGGAATGGAAGCACGTGGTACAGATTTATTGAACCAACCTGT AGA GAAGTACTTT GGTGCTGCACGCCTATGG CCAT GGGAAGTC ATTTATTAT CGGAAGCTT AAAAAGGGTCC AATTT CTAC AGAGAA CTACGCTAAGCGAC TTGAGCAGAACAAAGAATATAGTATTGTAGATCGGTATGTCAGAAGCAGCAGTGGTTGGTGGGAGTGCCACTAGAAT GCCAGACTGGTGGTATAGATAGATGCAGTTGAGGCTTTGCGTGTATGCTGCTGCAGGTACATTTTGAGGATGACAAGGTTTGCCTTCTAATCAGTCCATTCCTAGAGCTCCATGAGTGTAAGCAGACCCTTAACTATGAGAATTATTAAGTATTAGGTTCTTTCATTAGTATAATTTTGTTGAGTAAGGGTTTGCACAATTGCACCTAAGTAGCTTATTCTGCCACCAATATTATGCTGTTGCATGGTCAGTATGTTTTAAGTTGTAATGTTTCAACGACTCGCCCCAGTGAGGTACTTTGGATGGCCAACAGGTAAGCAAAGATGCTTATTTTATACATGATTTTTTGGGGAAAAGAAACAAGCCTCTTGTTTAGCAGTTATATAGAGGAAAGGTTCTCTCTGTAGTTTATGATTTCCTTAGTACTCCCTCCCTCTGGTTTCATAATTCTTGACATTTTGGACAATGATATGG] [+] EMBL CB677555 [ GTTGATAAGGTGGTAGAAACACATCGTATGGTACAAGATGGCAGGAAACAATTTTCTGATAGGACTAGCCACGCTCACAGATTGAGTAATGTTTCTAGAGAGGACAAAAGGCATACCCGTTGCAGTGAAAGTATACCACAGACCCCCAAGGAGTCACGCAAGAGAAGCAGATCTAAAAGATCCCGTGGGTCATCCCTCTCTTCTGACAGGAGTACCTCACATTCAACATCTAAATGTTCTCGTTCAAGAGCACATTCCCCATCTCATTCTGCACATTCTAGTTCAAAATCATTTCAGCCAACTCAGCCTGAAGGTTTAAGATCAATGGCAGTATCAAATGTCAGTCCATTGCTGGTGTCTGGTTCACCACAACACAACTTACCATCCACAGCGGAAAACAAGAACTCAGATTTTCTGGTGAATTCTCCTTTGGAGGGCAATTTAGATTCCAAAACAACAACTGGACTCAAGCATACACGTGGTTACCAGCAAGATATCAAAGATTCAAGATTGAGTGGAGAGTCTCCAGTTATTCCACTCAGGTTGAAAATCCAAAGGAATGGTGAATTGCCTGTATCTGGTAAAGATGCTTATCTGGATGGTTACACAGAGACCAACTTGAATAATAACTTGGTTTATGATGACAATGTTGCTGATGGTGTGCAAGTTCAGAAGACCAATTCTGAGGACGCTTCATCAGTGAAGTCAAGCAAGGATATTCTGGTGAAAAGTGAGAGGAGCAACTCTTTGAAGCTAANCACAAATGAAGT ] [+] EMBL BI800966 [ gACCGGTAAGAGGAAGTACTTTGGGTGCTGCAACCCTATGGCCCATGGGGAAGTCAATTTATTATCCGGAAGCTTAAAAAAGGGTCCAAATTTCCTACAAGAGAATCTACGCTAAGCGACTTTGAGCAGACAAAAGAATATAGTATTGTAGATCGGTAT TCAGAAGCAGCA T GTT GTGGGAGT CCACTAGAATGGCCAGACTGGTGGTATAGATAGAT CAGTTGAGGCTTTGCGTGTATGCTGCTGCAGGTACATTTTGAGGATGACAAGGTTTGCCTTCTAATCAGTCCATTCCTAGAGCTCCATGAGTGTAAGCAGACCCTT ACTATGAGAATTATTAAGTATTAGGTTCTTTCATTAGTATAATTTTGTTGAGTAAGGGTTTGCACAATTGCACCTAAGTAGGTTATTCTGCCACCAATATTATGCTGTTGCATGGTCAaaaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||