Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8067 cluster # 8067       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8067#0 length = 2218 sequences # 5  

consensusID : consensus_8067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2218
fasta sequence
                              [GAGCTCCAATTGCAGGTGAATTCCAACTGTCAGTGCAATAGGGTCTATTGGGAGCAGTCTCCTTTTGGGTATTTTAGGTCAATATGATCCAAGATCTTGATTAGTGGTTTGTGAATATATTCCAAGATCTGGTAACCTGATATCATGTCTTTTTGGTCCAACAGGTAGATTTCGCCTCACATGAATCAATCGGACCTATTGTCAGTTTGTCACTAGGTGTTTGTACATGTTGTCTTTGTAGCATAATTAGTACTGATGACCAATTAGCAGCAGCTAACTCCATTCATGCTTTACAATGATTGATGAAATAAAGCATCTGCACTTTATCATCTGGACGACTTGTTGGCTGGTGCTCGCGGCGCTGGGAATACCTGTCGTATGTGCGCCGCTGATCTGAATAATGTTGTGTGATTTTAATCAAGTTGGATACTTGATTTGAATATATTGCAGATATCGTACCTACTTGCTCTGTTTGTTTGTTTGTTTTTTGGTTATATTTCTAGGCAATGCATTGTAAGTTGAAGGCCACCATCACAGTATCAGCTAAGGGTGTGCATTTGATCTTTACCTTGTAGAGGTCATCAAACTCTAATCGTACCTGAAACTTTGTGTATTTTAGTCTTTACCTGCCATGGTGAAAGATTTGTTGACTCAGTTTGATAGGTCGTTTTACTATATTACTGTCATTGTGATCGTGCTCGGTATGTAGATTTATTTATGCGGGATGCATATGCTGCCCAACATCATTAGGCCACTAACTTACTGGTATTGTCCCACACTAATTAAGTATTCTGACTCTACAAAAAACGACTTCAACTAAGGCACCCTATGCTAGCATGCTACACCTTGTTTTTATCTCACTAGTCACTAAGATAATTTTAGGCAAAAGATCAAGTAGATAACCCCCTATGCTAGCATGCTACACCCTGTTTTGATCTCACTAGTTACTAAGATAATTTTAGGCAAAAGATCAAGTAGATAACCAATAATTTACTTTGGTATCCTTGGCTACTTCAGGTTGTTGCCTTGTTGGATTGAGATGCCATCAAGGCATATGGTACGGATAATTAGCACTGACAGTAATTACATACTCAATTCAATCAGCAACACAGATCTGAGTGTGAGGAACAACACCAACCAGGCAACCACGTTCTGGTCAAAGCCAGGCAAGAATTCCTTGATGCCTCCAAGCTCAGGATAAAACAATGACGCTTCCGGTACACTTGCTATCCAGTTGAATACATTATGCGAACATCTTGCCATTTCTTTAACGATCTTTGATCTGAATAAACAACTCGTCTTCAGACATGGCGCCATCCGGGCGGACAGTTCATCGCCCTCGTTTTATATATCTAGATCTGAACACAACCTGCTGCACTGCATTACCATCCATCTCTTCTTCTTCCTCTTCTACTTGAGCTGAAGCTGAAGCTGCCATTGTCTTGCTGAGCTCGTTTGGNTCTCTTTGGTCTAGCTTGCAATGGCTAGCGTCGTGCAGTACCAGGCGGCGGCGGCGGCGACGGCGATGGCGTGCGAGGAGGAGTTCATTCCGCA-GGGCTGATCTCCTGCTTCGGGCGGTCGCTGTCGAGGGCGTCGTCGGGGCGACACCTGGAGTACTGCAGCAGGGACGTGAGCGGCGGCGGCGAGGATAGCCGGCGCATGGCGCAGGAGCGATCGGCGAGGGCGAAGCTGCGGTGGAAGGCCGTGGCGCAGGAGATCATGGCGAGGAGGAGCGGCGGCGGCGGCGGCGGATCAGGGCGGCGGAGGAAGACGGCGTTCAGCTACGACTCCAAGAGCTACGCGCTCAACTTCGACGACCAGGCCGCCGGCG-CCGAGTAAGAGCTCCAGCCTCCAGCTGCTACGTCGCCGGTGAGCTAGAGCTAGCTGCAGAGACGGGACAGACGAGCGCGTGCAATATCGCGCTCGCGCGCGACGGCCGGCCGGCCGGCGAGGGGACGGAGTGCTCG-CCGGTAGCTCCTCCGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGGCGGGATCCATGTGAAGACAGAGAGAGATCAAGCTTGAAGAATGAAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAGTTTTGTTTCTTTGGCTGTTTTTTTTTTCATTTTTGAGATTGTAAACGTATGCATCCTGACATCTTGAATTGTTGATGTGGTGCAGTAAGTAATAAAAAACTGAGGCATTTATTCAAAAAAAAA]

[+] EMBL AK120026             [GAGCTCCAATTGCAGGTGAATTCCAACTGTCAGTGCAATAGGGTCTATTGGGAGCAGTCTCCTTTTGGGTATTTTAGGTCAATATGATCCAAGATCTTGATTAGTGGTTTGTGAATATATTCCAAGATCTGGTAACCTGATATCATGTCTTTTTGGTCCAACAGGTAGATTTCGCCTCACATGAATCAATCGGACCTATTGTCAGTTTGTCACTAGGTGTTTGTACATGTTGTCTTTGTAGCATAATTAGTACTGATGACCAATTAGCAGCAGCTAACTCCATTCATGCTTTACAATGATTGATGAAATAAAGCATCTGCACTTTATCATCTGGACGACTTGTTGGCTGGTGCTCGCGGCGCTGGGAATACCTGTCGTATGTGCGCCGCTGATCTGAATAATGTTGTGTGATTTTAATCAAGTTGGATACTTGATTTGAATATATTGCAGATATCGTACCTACTTGCTCTGTTTGTTTGTTTGTTTTTTGGTTATATTTCTAGGCAATGCATTGTAAGTTGAAGGCCACCATCACAGTATCAGCTAAGGGTGTGCATTTGATCTTTACCTTGTAGAGGTCATCAAACTCTAATCGTACCTGAAACTTTGTGTATTTTAGTCTTTACCTGCCATGGTGAAAGATTTGTTGACTCAGTTTGATAGGTCGTTTTACTATATTACTGTCATTGTGATCGTGCTCGGTATGTAGATTTATTTATGCGGGATGCATATGCTGCCCAACATCATTAGGCCACTAACTTACTGGTATTGTCCCACACTAATTAAGTATTCTGACTCTACAAAAAACGACTTCAACTAAGGCACCCTATGCTAGCATGCTACACCTTGTTTTTATCTCACTAGTCACTAAGATAATTTTAGGCAAAAGATCAAGTAGATAACCCCCTATGCTAGCATGCTACACCCTGTTTTGATCTCACTAGTTACTAAGATAATTTTAGGCAAAAGATCAAGTAGATAACCAATAATTTACTTTGGTATCCTTGGCTACTTCAGGTTGTTGCCTTGTTGGATTGAGATGCCATCAAGGCATATGGTACGGATAATTAGCACTGACAGTAATTACATACTCAATTCAATCAGCAACACAGATCTGAGTGTGAGGAACAACACCAACCAGGCAACCACGTTCTGGTCAAAGCCAGGCAAGAATTCCTTGATGCCTCCAAGCTCAGGATAAAACAATGACGCTTCCGGTACACTTGCTATCCAGTTGAATACATTATGCGAACATCTTGCCATTTCTTTAACGATCTTTGATCTGAATAAACAACTCGTCTTCAGACATGGCGCCATCCGGGCGGACAGTTCATCGCCCTCGTTTTATATATCTAGATCTGAACACAACCTGCTGCACTGCATTACCATCCATCTCTTCTTCTTCCTCTTCTACTTGAGCTGAAGCTGAAGCTGCCATTGTCTTGCTGAGCTCGTTTGGATCTCTTTGGTCTAGCTTGCAATGGCTAGCGTCGTGCAGTACCAGGCGGCGGCGGCGGCGACGGCGATGGCGTGCGAGGAGGAGTTCATTCCGCAGGGGCTGATCTCCTGCTTCGGGCGGTCGCTGTCGAGGGCGTCGTCGGGGCGACACCTGGAGTACTGCAGCAGGGACGTGAGCGGCGGCGGCGAGGATAGCCGGCGCATGGCGCAGGAGCGATCGGCGAGGGCGAAGCTGCGGTGGAAGGCCGTGGCGCAGGAGATCATGGCGAGGAGGAGCGGCGGCGGCGGCGGCGGATCAGGGCGGCGGAGGAAGACGGCGTTCAGCTACGACTCCAAGAGCTACGCGCTCAACTTCGACGACCAGGCCGCCGGCG CCGAGTAAGAGCTCCAGCCTCCAGCTGCTACGTCGCCGGTGAGCTAGAGCTAGCTGCAGAGACGGGACAGACGAGCGCGTGCAATATCGCGCTCGCGCGCGACGGCCGGCCGGCCGGCGAGGGGACGGAGTGCTCG CCGGTAGCTCCTCCGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGGCGGGATCCATGTGAAGACAGAGAGAGATCAAGCTTGAAGAATGAAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAGTTTTGTTTCTTTGGCTGCTTTTTTTTTCATTTTTGAGATTGTAAACGTATGCATCCTGACATCTTGAATTGTTGATGTGGTGCAGTAAGTAATAAAAAACTGAG                   ]
[+] EMBL OSR14091A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              nnntnCTTCTTCTTCCTCTTCTACTTGAGCTGAAGCTGAAGCTGCCATTGTCTTGCTGAGCTCGTTTGGNTCTCTTTGGTCTAGCTTGCAATGGCTAGCGTCGTGCAGTACCAGGCGGCGGCGGCGGCGACGGCGATGGCGTGCGAGGAGGAGTTCATTCCGCA GGGCTGATCTCCTGCTTCGGGCGGTCGCTGTCGAGGGCGTCGTCGGGGCGACACCTGGAGTACTGCAGCAGGGACGTGAGCGGCGGCGGCGAGGATAGCCGGCGCATGGCGCAGGAGCGATCGGCGAGGGCGAA NTGCGGTGGAAGGCCGTGGCGCAGGAGATCATGGCGAGGAGGAGCGGCGGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSR20951A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCTACTTGAGCTGAAGCTGAAGCTGCCATTGTCTTGCTGAGCTCGTTTGGNTCTCTTTGGTCTAGCTTGCAATGGCTAGCGTCGTGCAGTACCANGCGGCGGCGGCGGCGACGGCGATGGCGTNCGANGAGGAGTTCATTCCGCA GGGCTGATCTCCTGCTTCGGGCGGTCGCTGTCGAGGGCGTCGTCGGGGCGACACCTGGAGTACTGCAGCAGGGACGTNAGCGGCGGCGGCGAGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU184374             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCCGGCGCCCGAGTAA A CTCCAGCCTCCAGCTGNTACGTCGCCGGTGAGCTAGAGCTAGCTGCAGAGACGGGACAGACGAGCGCGTGCAATATCGCGCTCGCGCGCGACGGCCGGCCGGCCGGCGAGGGGACGGAGTGCTCG CCGGTAGCTCCTCCGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGGCGGGATCCATGTGAAGACAGAGAGAGATCAAGCTTGAAGAATGAAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAGTTTTGTTTCTTTGGCTGTTTTTTTTTTCATTTTTGAGATTGTAAACGTATGCATCCTGACATCTTGAATTGTTGATGTGGTGCAGTAAGTAATAAAAAACTGAGGCATTTATTCAAAAAAAAA]
[+] EMBL AU184151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGCTCCAGCCTCCAGTTG TTCGTCGCCGGTGAGCTAGAGCTAGCTGCAGAGACGGG CAGACGAGCGCGTNCAATATCGCGCTCGCGCGCGACGGCCGGCCGGCCGGCGA GGGACGGAGTGCTCGNCCGGTAGCTCCTCCGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGNCGGGATCCATGTGAAGACAGAGAGAGATCAAGCTT AAGAAT AAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAG TTTG TTCTTTGGCTGTTTTTTTTTTCATTTTTGAGATTGT AACGTAT CATCCTTACATCTT AATTGTT ATGTGGT CAGT AGT AT AAAAACTGAGGCATTT TTCAAAAAAAA ]


>consensus_8067#0 GAGCTCCAATTGCAGGTGAATTCCAACTGTCAGTGCAATAGGGTCTATTGGGAGCAGTCT CCTTTTGGGTATTTTAGGTCAATATGATCCAAGATCTTGATTAGTGGTTTGTGAATATAT TCCAAGATCTGGTAACCTGATATCATGTCTTTTTGGTCCAACAGGTAGATTTCGCCTCAC ATGAATCAATCGGACCTATTGTCAGTTTGTCACTAGGTGTTTGTACATGTTGTCTTTGTA GCATAATTAGTACTGATGACCAATTAGCAGCAGCTAACTCCATTCATGCTTTACAATGAT TGATGAAATAAAGCATCTGCACTTTATCATCTGGACGACTTGTTGGCTGGTGCTCGCGGC GCTGGGAATACCTGTCGTATGTGCGCCGCTGATCTGAATAATGTTGTGTGATTTTAATCA AGTTGGATACTTGATTTGAATATATTGCAGATATCGTACCTACTTGCTCTGTTTGTTTGT TTGTTTTTTGGTTATATTTCTAGGCAATGCATTGTAAGTTGAAGGCCACCATCACAGTAT CAGCTAAGGGTGTGCATTTGATCTTTACCTTGTAGAGGTCATCAAACTCTAATCGTACCT GAAACTTTGTGTATTTTAGTCTTTACCTGCCATGGTGAAAGATTTGTTGACTCAGTTTGA TAGGTCGTTTTACTATATTACTGTCATTGTGATCGTGCTCGGTATGTAGATTTATTTATG CGGGATGCATATGCTGCCCAACATCATTAGGCCACTAACTTACTGGTATTGTCCCACACT AATTAAGTATTCTGACTCTACAAAAAACGACTTCAACTAAGGCACCCTATGCTAGCATGC TACACCTTGTTTTTATCTCACTAGTCACTAAGATAATTTTAGGCAAAAGATCAAGTAGAT AACCCCCTATGCTAGCATGCTACACCCTGTTTTGATCTCACTAGTTACTAAGATAATTTT AGGCAAAAGATCAAGTAGATAACCAATAATTTACTTTGGTATCCTTGGCTACTTCAGGTT GTTGCCTTGTTGGATTGAGATGCCATCAAGGCATATGGTACGGATAATTAGCACTGACAG TAATTACATACTCAATTCAATCAGCAACACAGATCTGAGTGTGAGGAACAACACCAACCA GGCAACCACGTTCTGGTCAAAGCCAGGCAAGAATTCCTTGATGCCTCCAAGCTCAGGATA AAACAATGACGCTTCCGGTACACTTGCTATCCAGTTGAATACATTATGCGAACATCTTGC CATTTCTTTAACGATCTTTGATCTGAATAAACAACTCGTCTTCAGACATGGCGCCATCCG GGCGGACAGTTCATCGCCCTCGTTTTATATATCTAGATCTGAACACAACCTGCTGCACTG CATTACCATCCATCTCTTCTTCTTCCTCTTCTACTTGAGCTGAAGCTGAAGCTGCCATTG TCTTGCTGAGCTCGTTTGGNTCTCTTTGGTCTAGCTTGCAATGGCTAGCGTCGTGCAGTA CCAGGCGGCGGCGGCGGCGACGGCGATGGCGTGCGAGGAGGAGTTCATTCCGCAGGGCTG ATCTCCTGCTTCGGGCGGTCGCTGTCGAGGGCGTCGTCGGGGCGACACCTGGAGTACTGC AGCAGGGACGTGAGCGGCGGCGGCGAGGATAGCCGGCGCATGGCGCAGGAGCGATCGGCG AGGGCGAAGCTGCGGTGGAAGGCCGTGGCGCAGGAGATCATGGCGAGGAGGAGCGGCGGC GGCGGCGGCGGATCAGGGCGGCGGAGGAAGACGGCGTTCAGCTACGACTCCAAGAGCTAC GCGCTCAACTTCGACGACCAGGCCGCCGGCGCCGAGTAAGAGCTCCAGCCTCCAGCTGCT ACGTCGCCGGTGAGCTAGAGCTAGCTGCAGAGACGGGACAGACGAGCGCGTGCAATATCG CGCTCGCGCGCGACGGCCGGCCGGCCGGCGAGGGGACGGAGTGCTCGCCGGTAGCTCCTC CGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGGCGGGATCCATGTGAAGACAG AGAGAGATCAAGCTTGAAGAATGAAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAGTTTTG TTTCTTTGGCTGTTTTTTTTTTCATTTTTGAGATTGTAAACGTATGCATCCTGACATCTT GAATTGTTGATGTGGTGCAGTAAGTAATAAAAAACTGAGGCATTTATTCAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)