cluster # 8077

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Oryza sativa
cluster # 8077 cluster # 8077 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8077#0 length = 774 sequences # 4

consensus_8077#1 length = 357 sequences # 1

consensusID : consensus_8077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 774
fasta sequence

                              [TTCAGCCCAATCCCCCGATCCTCTTCCTCTCTCTCAAAGCGACCGCGG-CGGCGACAGAGCCTGGCGACGGCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAGCGGCT-TCCCGCGCCGCTCCGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGGCAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACGACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCACCGTGAGCAGCGGCGGTGGAGGTGCCCTCCTGCGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGTGATGAATTTTTAAGAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAACGAGGTGAATCTGTGATGAATCGGCTGCAAATCCGTGGGTGGTTTAGTGGGTTTCTTTTTTTTTTTTTGCGATTTCTTCCATCCCTAACACAATCGAATTAGGATGTACAGGTTTACGGTCGAATACACGGACAAAA]

[+] EMBL AK105206             [TTCAGCCCAATCCCCCGATCCTCTTCCTCTCTCTCAAAGCGACCGCGG CGGCGACAGAGCCTGGCGACGGCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAGCGGCT TCCCGCGCCGCTCCGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGGCAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACGACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCACCGTGAGCAGCGGCGGTGGAGGTGCCCTCCTGCGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGTGATGAATTTTTAAGAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAACGAGGTGAATCTGTGATGAATCGGCTGCAAATCCGTGGGTGGTTTAGTGGGTTTCTTTTTTTTTTTTTGCGATTTCTTCCATCCCTAACACAATCGAATTAGGATGTACAGGTTTACGGTCGAATACACGGACAAAA]
[+] EMBL C26951               [                 ATCCTCTTCCTCTCTCTCAAAGCGACCGCGN CGGCGACAGAGCCTGGCGACGNCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAG GCNTGTCCCGCGNCGCTCCGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGGCAGNGGTGATGACCTCCTCCTCCATNCCCCTCTTGCGGTGGTCGAGCAGCGGCGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C74168               [                  TCCTCTTCCTCTCTCTCAAAGCGACCGCGGACGGCGACAGAGCCTGGCGACGGCGCCCTCNNNNCCCCCTCCCGCGCGCGCGCAG GCTT TCCCGCNCCGCTCCGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGGCAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACGACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCANCGTGAGCAGCGGCGGTGGAGGTGCCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK119718             [                                            GCGG CGGCGACAGAGCCTGGCGACGGCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAGCGGCT TCCCGCGCCGCTCCGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGGCAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACGACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCACCGTGAGCAGCGGCGGTGGAGGTGCCCTCCTGCGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGTGATGAATTTTTAAGAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAACGAGGTGAATCTGTGATG                                                                                                                       ]




>consensus_8077#0
TTCAGCCCAATCCCCCGATCCTCTTCCTCTCTCTCAAAGCGACCGCGGCGGCGACAGAGC
CTGGCGACGGCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAGCGGCTTCCCGCGCCGCTC
CGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGG
CAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACG
ACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCACCGTGAGCAGCGGCGGTGGAGG
TGCCCTCCTGCGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTC
CAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGG
CAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTT
GCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCT
CTTTGTGATGAATTTTTAAGAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTC
CCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAACGAGGTGAATCTGTGATGAATCG
GCTGCAAATCCGTGGGTGGTTTAGTGGGTTTCTTTTTTTTTTTTTGCGATTTCTTCCATC
CCTAACACAATCGAATTAGGATGTACAGGTTTACGGTCGAATACACGGACAAAA

consensusID : consensus_8077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [CCTGNGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGTGATGAATTTTTAANAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101401             [CCTGNGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGTGATGAATTTTTAANAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8077#1
CCTGNGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTCCAGTCG
ACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGGCAGCGG
CTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTTGCGGTG
GCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCTCTTTGT
GATGAATTTTTAANAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTCCCCTTG
TGATTGAATCTGTGATGAATTGGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8077#0      TTCAGCCCAATCCCCCGATCCTCTTCCTCTCTCTCAAAGCGACCGCGGCGGCGACAGAGC 60
consensus_8077#1      ------------------------------------------------------------
                                                                                  

consensus_8077#0      CTGGCGACGGCGCCCTCCTCCCCCCCTCCCGCGCGCGCGCAGCGGCTTCCCGCGCCGCTC 120
consensus_8077#1      ------------------------------------------------------------
                                                                                  

consensus_8077#0      CGGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCGTTGCGGTGGCCCCCTTCCTCGG 180
consensus_8077#1      ------------------------------------------------------------
                                                                                  

consensus_8077#0      CAGCGGTGATGACCTCCTCCTCCATCCCCCTCTTGCGGTGGTCGAGCAGCGGCGGCGACG 240
consensus_8077#1      ------------------------------------------------------------
                                                                                  

consensus_8077#0      ACGCCCTCTCCAAGCGGCTGTGGCGGTGCCCTCCCCCACCGTGAGCAGCGGCGGTGGAGG 300
consensus_8077#1      ------------------------------------------------------------
                                                                                  

consensus_8077#0      TGCCCTCCTGCGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTC 360
consensus_8077#1      ------CCTGNGGCTTCCCACGGGCGGATCCGGCGGCGACGTCGGCTTCCCGCGTCGGTC 54
                            **** *************************************************

consensus_8077#0      CAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGG 420
consensus_8077#1      CAGTCGACCACCGGCTCCACCCCGTCCTCCTCTCCTCATTGAGGCAGCCCCCTTCCCCGG 114
                      ************************************************************

consensus_8077#0      CAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTT 480
consensus_8077#1      CAGCGGCTACGACCTCCTCCTAGTTGGGCGCAGGAGTAGGCGGCGGTTGGAGCAGGTGTT 174
                      ************************************************************

consensus_8077#0      GCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCT 540
consensus_8077#1      GCGGTGGCGGACACGACAGCGACGAGCTGGTGGCGGTGGCGGGCACGCTAGGGCTCCTCT 234
                      ************************************************************

consensus_8077#0      CTTTGTGATGAATTTTTAAGAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTC 600
consensus_8077#1      CTTTGTGATGAATTTTTAANAGATTTGTTTTTCATTTTTTTCTCTTTTTAGTTGATTTTC 294
                      ******************* ****************************************

consensus_8077#0      CCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAACGAGGTGAATCTGTGATGAATCG 660
consensus_8077#1      CCCTTGTGATTGAATCTGTGATGAATTGGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAA 354
                      *************************************  *    **      *  **   

consensus_8077#0      GCTGCAAATCCGTGGGTGGTTTAGTGGGTTTCTTTTTTTTTTTTTGCGATTTCTTCCATC 720
consensus_8077#1      AAA--------------------------------------------------------- 357
                                                                                  

consensus_8077#0      CCTAACACAATCGAATTAGGATGTACAGGTTTACGGTCGAATACACGGACAAAA 774
consensus_8077#1      ------------------------------------------------------