These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1550 fasta sequence [TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATG-AAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTC-TTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTTGAAATGCTATTGCTGTG] [+] EMBL AK119646 [TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATG AAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTC TTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTG ] [+] EMBL AK105260 [ GCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATGAAAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTCTTTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTTGAAATGCTATTGCTGTG] consensusID : consensus_8079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAACCTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAAAAAAAAAAAA] [+] EMBL C99361 [AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAACCTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAAAAAAAAAAAA] [+] EMBL AA750828 [ TTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTT CCCAACTTAAGAGGGAATTGAAGCCAATAATC ] consensusID : consensus_8079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [GCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCNCCGCCGCCGCCGCCGCCGCCGCAGCCNGCGAAGGAGCCACCGCCGCCGCAGAAGCCACCGCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGCGNCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTT] [+] EMBL AU162217 [GCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCNCCGCCGCCGCCGCCGCCGCCGCAGCCNGCGAAGGAGCCACCGCCGCCGCAGAAGCCACCGCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGCGNCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8079#0 TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGC 60 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCG 120 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 AGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGC 180 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 CGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGC 240 consensus_8079#2 ---------------------------------------------------GCACGCCGC 9 consensus_8079#1 ----------AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAAC 50 * * * consensus_8079#0 CGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCG 300 consensus_8079#2 CGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCG 69 consensus_8079#1 CTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGG--CTTGGTCTCCAAGATTCAGAGGG 108 * *** ** ** * * * ***** * ** ****** * ** * * consensus_8079#0 ACGACCTCCTCTACGGCCAGCACCACGCC----CTACCCCATCCTCCGCCGCCGCCGCCG 356 consensus_8079#2 ACGACCTCCTCTACGGCCAGCACCACGCC----CTACCCCATCCNCCGCCGCCGCCGCCG 125 consensus_8079#1 ACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTA 168 ** * *** * * * *** **** * ** consensus_8079#0 CCGCCGCAGCCTG--CGAAGGAGCC---------------ACCGCCGCCTACCAAGCCGA 399 consensus_8079#2 CCGCCGCAGCCNG--CGAAGGAGCC---------------ACCGCCGCC----------- 157 consensus_8079#1 GTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAG 228 * ** * *** ***** * * * * consensus_8079#0 AGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCC-GCAGA-AGCCACC 457 consensus_8079#2 -----------------------------------------------GCAGA-AGCCACC 169 consensus_8079#1 GTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCT 288 **** ** * consensus_8079#0 GCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGC-GGCAACGGCA 516 consensus_8079#2 GCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGC-GNCAACGGCA 228 consensus_8079#1 AGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCA 348 *** * * * * * ** *** ** ** * **** ** *** consensus_8079#0 ACCCACCACCATCGCCACA--GCTGCAGCTCTCCACCGTCATCGCCGA-CGTCTTCGTCA 573 consensus_8079#2 ACCCACCACCATCGCCACA--GCTGCAGCTCTCCACCGTCATCGCCGA-CGTCTT----- 280 consensus_8079#1 TCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAA 408 * ** *** *** * *** ** * * * * ****** consensus_8079#0 CCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACC 633 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 AAAAAAAAAA-------------------------------------------------- 418 consensus_8079#0 CGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCA 693 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 AGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGT 753 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGC 813 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 TGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAAC 873 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 CTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACA 933 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTA 993 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTC 1053 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 CTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGA 1113 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 AGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCT 1173 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 TGACAACATTGTCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTACCCTGTA 1233 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 CATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTCTT 1293 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 TTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTT 1353 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGAT 1413 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCAC 1473 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 TGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTT 1533 consensus_8079#2 ------------------------------------------------------------ consensus_8079#1 ------------------------------------------------------------ consensus_8079#0 GAAATGCTATTGCTGTG 1550 consensus_8079#2 ----------------- consensus_8079#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||