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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2298 fasta sequence
[CCACACGCAGCCGCCGGCGCCCGTCGAAATGCTGGCCAGGCCTGGGCGGCTCGCCGCTTCCACCCTTCCCAACGATTCCGCCGCCGCCGCCGCATCCACCGTCCTCTCCATACTCCGCGGCGAGGACCCCGCCAGCCTCCCCGCGGCCGGCATCGACCCGTGCCCCGCCGTGTTCCAGCAACTCCGCCCGTCGCTGCCCACCGTCCCGGACTCCGCGCTCCCGGCGCTGGCCCGATGGGCGGGCGAAGCCACCGCCGTCTCCCTCCTGACGTCCCGCGGCCTCTTTGCTGCCGCCTGGCGCCTCCTCCTGGCCCCTTCCCCCACGCCTCCTCCCCTCGCCGCCTTCGCCCCGCTCGTCCGACGCTACGCCCGCCTCGGCCGCGCCCCCGCCGCCCTCCGCGCCTTCCAGTTCCTCCGCCGCCACCCCGACCGCTACATGGCCGGCGGCGACATCCCTGCCGCGGCGTCCCTGCTAAACATGGCGGTCGACGCGCTCTGCAAGGAGGGCCACCCGCGCGCGGCCGTGGAGCTCTTCGAGCGGTGGCGCCGCGAGGAGCCCGACTCGCCACCAGATGAGCGGGCTTACAATATCCTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGACAAGGTGGGGAAACTCTGGGCCGAGATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACGTATGGGACTCTCATCGAGGGGCTCTGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTTCTTGACGAGATGCGGGAAGAAGGGATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTGTACGCTCTTGCGCAGGCCGGCCGATTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCTCTGTACGGTGTCGCGCCCAACATTTCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAGCATGGGGACCTTGCTGGGGCTAGCAGTGTGCTCAAGGTGATGACAGAACGGGGCATTTCGCCGACCACAAGGACATACAATTATTTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAGTCAGGGATGAATTTTTATAGCAAAATGATCGGTAATGGCTATTCACCAGATCAGCTTACTTATGTCCTCTTGGTCAAGATGTTGTCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATGATACAGGAGATGAGAACTCATGGTTTTGAGCCAGATTTGGCGACGAGTACCATGCTGATACATTTGCTTTGCCGGCGTCATCAATTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTTAAGAGAGGAATTGTGCCCCAGTACATCACTTACCAGAAGCTTATGAGAGAGCTCAAGCGACTTGGTTTGGTTCATCTGATCCAAAAGTTGACAAATTTAATGCGCTCAGTGCCACATTCTACAAAGTTACCAGGCAGCTATAGGGATAAGGAAGGGGATGACTCCATGGAAAAGAGGAAATTGATATTGCAGAAAGCACAGGCTGTTTCAGATGTTTTGAAGGAGTGTAAAGATCCAAAGGAGTTGGGCAAGCTCAAAGAAGATGAAGA-GACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATATGGGGGTGCCTCAACGAGCTCTGTAATGGCACCTCTTTCTTGAATATGGAGTTGCAAAAATGAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCATTGTTCATCTCAGAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGGGCCCTTCAAGATAAAAGATAACAGAGAAGAGGTAGTGACATACTACTGTGGTTGTGGTTTACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTTTAGGGAAACATTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGACCTGTGTATGCCTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGCCTCATTCGAAGTCTAACCAGTGAACATAGAATTGGTAGGACATTATTTAGCATGCGGCAGCCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTGTGTAAAGAATTTTCCGTTGCTTTGTTGGTCGGATACTGCTTCAGATGCTGTTGTTAAATTGAGATCATTTAGAAATCCCATTTCCTGTTAAACAAATACAATTAAACTTTGACTCTCCATTTCCTTTA-GTT-TAGAAAGTCTTGAAATAAATTGCTC]
[+] EMBL AK102377 [CCACACGCAGCCGCCGGCGCCCGTCGAAATGCTGGCCAGGCCTGGGCGGCTCGCCGCTTCCACCCTTCCCAACGATTCCGCCGCCGCCGCCGCATCCACCGTCCTCTCCATACTCCGCGGCGAGGACCCCGCCAGCCTCCCCGCGGCCGGCATCGACCCGTGCCCCGCCGTGTTCCAGCAACTCCGCCCGTCGCTGCCCACCGTCCCGGACTCCGCGCTCCCGGCGCTGGCCCGATGGGCGGGCGAAGCCACCGCCGTCTCCCTCCTGACGTCCCGCGGCCTCTTTGCTGCCGCCTGGCGCCTCCTCCTGGCCCCTTCCCCCACGCCTCCTCCCCTCGCCGCCTTCGCCCCGCTCGTCCGACGCTACGCCCGCCTCGGCCGCGCCCCCGCCGCCCTCCGCGCCTTCCAGTTCCTCCGCCGCCACCCCGACCGCTACATGGCCGGCGGCGACATCCCTGCCGCGGCGTCCCTGCTAAACATGGCGGTCGACGCGCTCTGCAAGGAGGGCCACCCGCGCGCGGCCGTGGAGCTCTTCGAGCGGTGGCGCCGCGAGGAGCCCGACTCGCCACCAGATGAGCGGGCTTACAATATCCTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGACAAGGTGGGGAAACTCTGGGCCGAGATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACGTATGGGACTCTCATCGAGGGGCTCTGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTTCTTGACGAGATGCGGGAAGAAGGGATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTGTACGCTCTTGCGCAGGCCGGCCGATTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCTCTGTACGGTGTCGCGCCCAACATTTCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAGCATGGGGACCTTGCTGGGGCTAGCAGTGTGCTCAAGGTGATGACAGAACGGGGCATTTCGCCGACCACAAGGACATACAATTATTTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAGTCAGGGATGAATTTTTATAGCAAAATGATCGGTAATGGCTATTCACCAGATCAGCTTACTTATGTCCTCTTGGTCAAGATGTTGTCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATGATACAGGAGATGAGAACTCATGGTTTTGAGCCAGATTTGGCGACGAGTACCATGCTGATACATTTGCTTTGCCGGCGTCATCAATTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTTAAGAGAGGAATTGTGCCCCAGTACATCACTTACCAGAAGCTTATGAGAGAGCTCAAGCGACTTGGTTTGGTTCATCTGATCCAAAAGTTGACAAATTTAATGCGCTCAGTGCCACATTCTACAAAGTTACCAGGCAGCTATAGGGATAAGGAAGGGGATGACTCCATGGAAAAGAGGAAATTGATATTGCAGAAAGCACAGGCTGTTTCAGATGTTTTGAAGGAGTGTAAAGATCCAAAGGAGTTGGGCAAGCTCAAAGAAGATGAAGA GACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATATGGGGGTGCCTCAACGAGCTCTGTAATGGCACCTCTTTCTTGAATATGGAGTTGCAAAAATGAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCATTGTTCATCTCAGAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGGGCCCTTCAAGATAAAAGATAACAGAGAAGAGGTAGTGACATACTACTGTGGTTGTGGTTTACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTTTAGGGAAACATTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGACCTGTGTATGCCTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGCCTCATTCGAAGTCTAACCAGTGAACATAGAATTGGTAGGACATTATTTAGCATGTGGCAGCCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTGTGTAAAGAATTTTCCGTTGCTTTGTTGGTCGGATACTTCTTCAGATGCTGTTGTTAAATTGAGATCATTTAGAAATCCCATTTCCTGTTA ]
[+] EMBL AK109825 [ CACACGCAGCCGCCGGCGCCCGTCGAAATGCTGGCCAGGCCTGGGCGGCTCGCCGCTTCCACCCTTCCCAACGATTCCGCCGCCGCCGCCGCATCCACCGTCCTCTCCATACTCCGCGGCGAGGACCCCGCCAGCCTCCCCGCGGCCGGCATCGACCCGTGCCCCGCCGTGTTCCAGCAACTCCGCCCGTCGCTGCCCACCGTCCCGGACTCCGCGCTCCCGGCGCTGGCCCGATGGGCGGGCGAAGCCACCGCCGTCTCCCTCCTGACGTCCCGCGGCCTTTTTGCTGCCGCCTGGCGCCTCCTCCTGGCCCCTTCCCCCACGCCTCCTCCCCTCGCCGCCTTCGCCCCGCTCGTCCGACGCTACGCCCGCCTCGGCCGCGCCCCCGCCGCCCTCCGCGCCTTCCAGTTCCTCCGCCGCCACCCCGACCGCTACATGGCCGGCGGCGACATCCCTGCCGCGGCGTCCCTGCTAAACATGGCGGTCGACGCGCTCTGCAAGGAGGGCCACCCGCGCGCGGCCGTGGAGCTCTTCGAGCGGTGGCGCCGCGAGGAGCCCGACTCGCCACCAGATGAGCGGGCTTACAATATCCTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGACAAGGTGGGGAAACTCTGGGCCGAGATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACGTATGGGACTCTCATCGAGGGGCTCTGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTTCTTGACGAGATGCGGGAAGAAGGGATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTGTACGCTCTTGCGCAGGCCGGCCGATTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCTCTGTACGGTGTCGCGCCCAACATTTCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAGCATGGGGACCTTGCTGGGGCTAGCAGTGTGCTCAAGGT TGACAGAACGGGGCATTTCGCCGACCACAAGGACATACAATTATTTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAGTCAGGGATGAATTTTTATAGCAAAATGATCGGTAATGGCTATTCACCAGATCAGCTTACTTATGTCCTCTTGGTCAAGATGTTGTCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATGATACAGGAGATGAGAACTCATGGTTTTGAGCCAGATTTGGCGACGAGTACCATGCTGATACATTTGCTTTGCCGGCGTCATCAATTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTTAAGAGAGGAATTGTGCCCCAGTACATCACTTACCAGAAGCTTATGAGAGAGCTCAAGCGACTTGGTTTGGTTCATCTGATCCAAAAGTTGACAAATTTAATGCGCTCAGTGCCACATTCTACAAAGTTACCAGGCAGCTATAGGGATAAGGAAGGGGATGACTCCATGGAAAAGAGGAAATTGATATTGCAGAAAGCACAGGCTGTTTCAGATGTTTTGAAGGAGTGTAAAGATCCAAAGGAGTTGGGCAAGCTCAAAGAAGATGAAGA GACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATATGGGGGTGCCTCAACGAGCTCTGTAATGGCACCTCTTTCTTGAATATGGAGTTGCAAAAATGAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCAT ]
[+] EMBL CB621388 [ AGCGGTGGCGCCGCGAGGAGCCCGACTCGCCACCAGATGAGCGGGCTTACAATATCCTTCTCCACGGCTGGAGCCGCGCCGGCAGGCTCGACAAGGTGGGGAAACTCTGGGCCGAGATGCGCCTCGCCGGGGTGCGCCCGACGGTGGTCACGTATGGGACTCTCATCGAGGGGCTCTGCGTGAAGCGCAGGCCAGACCAGGCGATTGCGCTTCTTGACGAGATGCGGGAAGAAGGGATCGAGGCCAATCTGCTTACTTGCAACCCCATTGTGTACGCTCTTGCGCAGGCCGGCCGATTCCAGGACGCCCACAAGGTGCTCGAGAAATTTCCTCTGTACGGTGTCGCGCCCAACATTTCCACCTTCAACTCGCTCGTGATGGGCTATTGCAAGCATGGGGACCTTGCTGGGGCTAGCAGTGTGCTCAAGGTGATGACAGAACGGGGCATTTCGCCGACCACAAGGACATACAATTATTTCTTCATGACCTTTGCCAAGAACAGCGATGTTGAGTCAGGGATGAATTTTTATAGCAAAATGATCGGTAATGGCTATTCACCAGATCAACTTACTTATGTCCTCTTGGTCAAGATGTTATCCAGGGCGAACCGGCTTGAACTTGTGGTGCAAATGATACAGGAGATGAGAACTCATGGTTTTGAGCCAGATTTGGCGACGAGTACCATGCTGATACATTTGCTTTGCCGGCGTCATCAATTTGAGGAGGCATGTGCTGAGTTTGAGGATATGTTTAAGAGAGGAATTGTGCCCCAGT ]
[-] EMBL CB621389 [ AAAGAAGATGAAGAGGACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATATGGGGTTGCCTCAACGAGCTCTGTATTGGCACCTCTTTCTTGAATATGGAGTTGCAAAAATGAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCATTGTTCATCTCAGAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGGGCCCTTCAAGATAAAAGATAACAGAGAAGAGGTAGTGACATACTACTGTGGTTGTGGTTTACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTTTAGGGAAACATTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGACCTGTGTATGCCTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGCCTCATTCGAAGTCTAACCAGTGAACATAGAATTGGTAGGACATTATTTAGCATGCGGCAGCCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTGTGTAAAGAATTTTCCGTTGCTTTGTTGGTCGGATACTGCTTCAGATGCTGTTGTTAAATTGAGATCATTTAGAAATCCCATTTCCTGTTAAACAAATACAATTAAACTTTGACTCTCCATTTCCTTTA GTTCTAGAAAGTCTTGAAATAAAT ]
[-] EMBL CB619565 [ GAAGA GACTGATGTTGAGGTCGCAGATAGGTTAGTAGCCAACATTAGAAGAAGTGTATATGGGGTTGCCTCAACGAGCTCTGTATTGGCACCTCTTTCTTGAATATGGAGTTGCAAAAATGAAAATCATAAAGATAAGGGACATGATTGCATGTGAGGGGATTTACTGATAGATTGCATTGTTCATCTCAGAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGGGCCCTTCAAGATAAAAGATAACAGAGAAGAGGTAGTGACATACTACTGTGGTTGTGGTTTACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTTTAGGGAAACATTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGACCTGTGTATGCCTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGCCTCATTCGAAGTCTAACCAGTGAACATAGAATTGGTAGGACATTATTTAGCATGCGGCAGCCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTGTGTAAAGAATTTTCCGTTGCTTTGTTGGTCGGATACTGCTTCAGATGCTGTTGTTAAATTGAGATCATTTAGAAATCCCATTTCCTGTTAAACAAATACAATTAAACTTTGACTCTCCATTTCCTTTATGTT AAGGGAATCTTGAAATAAATTGCTC]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||