These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATATAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATAGTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGCTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGAAGTATAAACAATAGTGAAAAAGGACTGTTATTGCAGTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAAAACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT] [+] EMBL CB624068 [ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATATAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATAGTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGCTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGAAGTATAAACAATAGTGAAAAAGGACTGTTATTGCAGTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAAAACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT] consensusID : consensus_8090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence [TACAGCCCCCTGTGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACTCAAATACGATCTAAAACTGGCAACATGAATGTTCATCTGGAGATTTGTGACCTTTCATCTATCAGTGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACTTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAAGGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATACACTTTAACAGAGCTAGTAATGCCACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGGAGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTCTTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTTTTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAAGAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAAGTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATACAGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTCACTGAAAACGAATTAGCTTT] [+] EMBL CB624067 [TACAGCCCCCTGTGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACTCAAATACGATCTAAAACTGGCAACATGAATGTTCATCTGGAGATTTGTGACCTTTCATCTATCAGTGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACTTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAAGGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATACACTTTAACAGAGCTAGTAATGCCACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGGAGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTCTTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTTTTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAAGAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAAGTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATACAGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTCACTGAAAACGAATTAGCTTT] consensusID : consensus_8090#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGGCATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCGTGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTNTCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCTTTCATGTCCTGGTTAACAATNTGGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNANNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATACACTTTAACAGNNNTAGTAATGCCACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNNN] [+] EMBL C25982 [GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGGCATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCGTGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTNTCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCTTTCATGTCCTGGTTAACAATNTG ] [+] EMBL CF196158 [ CTTCGTGGAACATGCCAAGAAATTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACAGCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGAATGTT CATCT GGA GA TTTGT GACCTT TCATCTATCAG TGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCAC TTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNANNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATACACTTTAACAGNNNTAGTAATGCCACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNNN] consensusID : consensus_8090#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TTTTTTTTTTTTTTATCCAGAAACTAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAANTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGGNAAATCCTTGTTCAATGGCTCGGTGTACATACCTCCTGAAGAAAACTGTAATGACACGAGCATCAGGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA] [-] EMBL AU092213 [TTTTTTTTTTTTTTATCCAGAAACTAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAANTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGGNAAATCCTTGTTCAATGGCTCGGTGTACATACCTCCTGAAGAAAACTGTAATGACACGAGCATCAGGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8090#0 -------------------------ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATA 35 consensus_8090#3 ------------------------------------------------------------ consensus_8090#1 ------------------------------------------------------------ consensus_8090#2 GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGG 60 consensus_8090#0 TAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATA 95 consensus_8090#3 ------------------------------------------------------------ consensus_8090#1 ------------------------------------------------------------ consensus_8090#2 CATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCG 120 consensus_8090#0 GTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTG 155 consensus_8090#3 ------------------------------------------------------------ consensus_8090#1 ------------------------------------------------------------ consensus_8090#2 TGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATT 180 consensus_8090#0 GTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTG 215 consensus_8090#3 ------------------------------------------------------------ consensus_8090#1 ----------------------------------TACAGCCCCCT-GTGCTTGGC-ATCA 24 consensus_8090#2 GCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGC-ATCA 239 consensus_8090#0 CAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAG----AAT 271 consensus_8090#3 --------------------------TTTTTTTTTTTTTTATCCAGAAACTAG----AAT 30 consensus_8090#1 CGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACT 84 consensus_8090#2 CGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGT 299 *** ** * * consensus_8090#0 CGAGC-CTATCTGAACGTGGGAAGCTGCA-GTCC---CAGCAAATATTTTTT---CCCTA 323 consensus_8090#3 CGAGC-CTATCTGAACGTGGGAAGCTGCA-GTCC---CAGCAAATATTTTTT---CCCTA 82 consensus_8090#1 CAAATACGATCTAAAACTGGCAACATGAATGTTC-ATCTGGAGA---TTTGTGA--CCTT 138 consensus_8090#2 CAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTN 359 * * * **** ** *** ** ** * ** * * * *** * * * consensus_8090#0 AATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGC--- 380 consensus_8090#3 AATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAN---- 138 consensus_8090#1 TCATCTATCAGT-GAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACT 197 consensus_8090#2 TCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCT 419 * * * * ** * ** *** * * ** consensus_8090#0 TGCA-GTCCCAGCAAAC--TTCAGATGTTTCGGTGCTTCAGCTCG-GTCAAAGTAGAAA- 435 consensus_8090#3 TGCA-GTCCCAGCAAAC--TTCAGATGTTTCGGTGCTTCAGCTCG-GTCAAAGTAGAAAA 194 consensus_8090#1 T-CATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAA- 255 consensus_8090#2 TTCATGTCCTGGTTAACAATNTGGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNA- 478 * ** **** * *** * * * * * ** *** * * * * * * consensus_8090#0 GACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCT 495 consensus_8090#3 GACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCT 254 consensus_8090#1 GGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATA---CACTTTAACAGAGCTA 312 consensus_8090#2 NNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATA---CACTTTAACAGNNNTA 535 *** * * *** ** ** * *** * * **** ** *** consensus_8090#0 TCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAG 555 consensus_8090#3 TCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAG 314 consensus_8090#1 GTAATGCC-ACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGG 371 consensus_8090#2 GTAATGCC-ACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNN 594 * * * * * * * * * *** **** consensus_8090#0 ACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCT------TG 609 consensus_8090#3 ACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCT------TG 368 consensus_8090#1 AGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTC 431 consensus_8090#2 N----------------------------------------------------------- 595 consensus_8090#0 TTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCA 669 consensus_8090#3 TTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCA 428 consensus_8090#1 TTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTT 491 consensus_8090#2 ------------------------------------------------------------ consensus_8090#0 TATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAA--CTGAAGTATAAACAATAGTGAAA 727 consensus_8090#3 TATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAA--CTG----GNAAATCCTTGTTCAA 482 consensus_8090#1 TTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAA 551 consensus_8090#2 ------------------------------------------------------------ consensus_8090#0 AAGGACTGTTATTGCA---GTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAA 784 consensus_8090#3 TGGCTCGGT----------GTACATACCTCCTGAAGAAAACTG--------TAATGACAC 524 consensus_8090#1 GAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAA 611 consensus_8090#2 ------------------------------------------------------------ consensus_8090#0 AACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT------- 837 consensus_8090#3 GA----GCATCA-GGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA---- 575 consensus_8090#1 GTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATAC 671 consensus_8090#2 ------------------------------------------------------------ consensus_8090#0 ------------------------------------------------------------ consensus_8090#3 ------------------------------------------------------------ consensus_8090#1 AGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTC 731 consensus_8090#2 ------------------------------------------------------------ consensus_8090#0 -------------------- consensus_8090#3 -------------------- consensus_8090#1 ACTGAAAACGAATTAGCTTT 751 consensus_8090#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||