These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1180 fasta sequence [GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGTCCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC-TACGCGTTCGT-GGCGCGCGGCACGGCGGTGC-TGGCGGAG-TACACCGAGTT-CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT-AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTCGATTGATCCTAAAAAA] [+] EMBL C26012 [GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGTCCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTNGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATCTTACGCGTTCGTGGGCGCGCGGGACGGCGGTTCTTGGCGGAGTTAAACCGAGTTNAACCG ] [+] EMBL AK059902 [ CCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC TACGCGTTCGT GGCGCGCGGCACGGCGGTGC TGGCGGAG TACACCGAGTT CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTC ] [+] EMBL AK102619 [ CCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC TACGCGTTCGT GGCGCGCGGCACGGCGGTGC TGGCGGAG TACACCGAGTT CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGT ] [+] EMBL AU092232 [ TAGAAAGGTTGAAAGATGCCTTCATGANGAGATATGGAGGTGGTAAAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGNATCCGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTCGATTGATCCTAAAAAA] consensusID : consensus_8101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence [TTATGATAGCTATTACACTTGCTTTAGTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTGCCATCTGCCAAAGCTGATATTTACCCTTTTATAATCTTATATTAATTGCTCAAGCTGTGTGCTTTACATATTAAGAATTTTGTTTTGCTTGGTTCTATCTGAACGCAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTTTTTTTAATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTTGAATTAAGCTATCTTCATCCATTATTACAGTCTGTTCATTTATGCTTCTTTGTGGTATTTTCAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAAAGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG] [+] EMBL CB096234 [TTATGATAGCTATTACACTTGCTTTAGTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTGCCATCTGCCAAAGCTGATATTTACCCTTTTATAATCTTATATTAATTGCTCAAGCTGTGTGCTTTACATATTAAGAATTTTGTTTTGCTTGGTTCTATCTGAACGCAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTTTTTTTAATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTTGAATTAAGCTATCTTCATCCATTATTACAGTCTGTTCATTTATGCTTCTTTGTGGTATTTTCAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAAAGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8101#0 GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGT 60 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 CCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGA 120 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 AACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCC 180 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 GCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGC 240 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 GGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATCTACGCGTTCGTGGCGCGCGGCACG 300 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 GCGGTGCTGGCGGAGTACACCGAGTTCACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGC 360 consensus_8101#1 ----------------------------------------------TTATGAT--AGCTA 12 * * ** consensus_8101#0 CTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTC 420 consensus_8101#1 TTACACTTGCTTTA-GTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTG--CC 69 * ** *** * ** * * ** * * * * * * * * consensus_8101#0 AGCTACGCGTGC-GACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTG 479 consensus_8101#1 ATCTGCCAAAGCTGATATTTACCCTTTTATAATCTT-----ATATTAATTGCTCAAGCTG 124 * ** * ** ** ** * ** * ** * * * * * ** consensus_8101#0 TGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAA 539 consensus_8101#1 TGTGCTTT-------ACATATTAAGAATTTTGTTTTGCTTGGTTCTAT-------CTGAA 170 *** ** * * * ** *** * * * * ** * * **** consensus_8101#0 AGATGACTTCATGAAGAGATATGGAGGTGGTAAAGCTGATACAGCTCTTGCAAAAAGTCT 599 consensus_8101#1 CG-------CAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTT----TTTTT 219 * ** ** * *** * ** * ** * ** * * consensus_8101#0 GAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGA 659 consensus_8101#1 AATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTT 279 * * ***** * *** ** * ** * ** * * *** * ** * consensus_8101#0 AGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTT 719 consensus_8101#1 -GAATTA----AGCTATCTTCATCCATTATTACAGTCTGTTCATTT----ATGCTTCTTT 330 *** ** ** ** * *** * * * ** ** ** consensus_8101#0 AGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGAC 779 consensus_8101#1 GTGGTATTTTCAGA---CTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGAC 387 * * *** ******************************************* consensus_8101#0 TTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAA 839 consensus_8101#1 TTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAA 447 ************************************************************ consensus_8101#0 GACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGT 899 consensus_8101#1 GACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGT 507 ************* ********************************************** consensus_8101#0 AATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACT 959 consensus_8101#1 AATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACT 567 ************************************************************ consensus_8101#0 ACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCG 1019 consensus_8101#1 ACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCG 627 ************************************************************ consensus_8101#0 GTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATA 1079 consensus_8101#1 GTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATA 687 ************************************************************ consensus_8101#0 CAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAA 1139 consensus_8101#1 CAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAA 747 *********** * ** ********** * *********** ****************** consensus_8101#0 AGTAGTAATAGTAC-GGTTGCTTGTCGATTGATCCTAAAAAA--------------- 1180 consensus_8101#1 AGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG 804 ************** ********* ************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||