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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1156 fasta sequence
[GAGNACAAGGGGTGGAAGTTTCTGTACATTAATGATGTCGAGTGCCAGTGTGAGCTGCCAGAGTCATATGAAGCGTACAGAAAGCAGCAACATCGATGGCATTCTGGTCCCATGCAGTTGTTTCGACTCTGTTTTGTCGACATCATCAAATCAAAGATTGGAGTATGGAAGAAGTTCAACCTCATCTTCCTTTTCTTTCTCCTTCGCAAACTCATATTGCCCTTCTATTCCTTCACACTTTTCTGCATCATCCTTCCCATGACAATGTTTGTCCCTGAAGCTGAGCTCCCTGCATGGGTGGTGTGCTACA-TCCAGCAACCATGTCCTTGCTGAATATTCTCCCAGCACCCAAATCCTTCCCATTTATTGTTCCCTACCTTCTGTTTGAGAATACCATGTCAGTGACAAAATTCAATGCCATGATTTCTGGCTTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTTGTGACCAAGAAATCGGGCCGTTCTTCTGAGGGCGATCTCGTTTCTCTTGTTGAGAAGCAGCCTAAGCAACAGAGAGTTGGGTCTGCACCCAACCTTGATTCCCTAGCGAAGGAGTCTCATCCGAAAAAGGATTCGAAAAAGAAAAAACACAATAGGATATACCAGAAGGAGCTGGCACTCTCCTTCCTTCTATTAACAGCAGCAGCTCGAAGCCTGCTCTCGGTGCAAGGCATACATTTCTACTTCCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTCGGCCTCGACTTGATCGGCGAGCAAGTCGAGTGATAGAATACATGTGGTATAATCGGTTTCTTTTTTTCTTTGGAGGGGGATATGCAATCAAAGAGAAGTTCTGGTAAAGGGAAAACGATACAGTATTGATGCAAAGACAAGAAGCTCTGGTCCCATTGATGGGGGGTTACAATTCATCGGAGACTCTGAATTGTTGGGGGTGTAGATATATGGCTTTTGGAGTCGGCCTGCAATGATGGTCTTTGATGTCTCAATTCTTTTGTAAGAATTCTCAGTGGTTAGAATGGGTTGTTTCTACTTACTTGACAGTTTACCTTCAAATGGAGATACTGTTATTTTAAATGTACTTTGGCCGATCACTATGGATGCATACTGTGGTACTCAATAGTACACCTTTTGATGAAAGATAGTAA]
[+] EMBL CA766042 [GAGNACAAGGGGTGGAAGTTTCTGTACATTAATGATGTCGAGTGCCAGTGTGAGCTGCCAGAGTCATATGAAGCGTACAGAAAGCAGCAACATCGATGGCATTCTGGTCCCATGCAGTTGTTTCGACTCTGTTTTGTCGACATCATCAAATCAAAGATTGGAGTATGGAAGAAGTTCAACCTCATCTTCCTTTTCTTTCTCCTTCGCAAACTCATATTGCCCTTCTATTCCTTCACACTTTTCTGCATCATCCTTCCCATGACAATGTTTGTCCCTGAAGCTGAGCTCCCTGCATGGGTGGTGTGCTACA TCCAGCAACCATGTCCTTGCTGAATATTCTCCCAGCACCCAAATCCTTCCCATTTATTGTTCCCTACCTTCTGTTTGAGAATACCATGTCAGTGACAAAATTCAATGCCATGATTTCTGGCTTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTTGTGACCAAGAAATCGGGCCGTTCTTCTGAGGGCGATCTCGTTTCTCTTGTTGAGAAGCAGCCTAAGCAACAGAGAGTTGGGTCTGCACCCAACCTTGATTCCCTAGCGAAGGAGTCTCATCCGAAAAAGGA ]
[+] EMBL AK110759 [ ATGTTTGTCCCCGAAGCTGAGCTCCCTGCATGGGTGGTGTGCTACATTCCAGCAACCATGTCCTTGCTGAATATTCTCCCAGCACCCAAATCCTTCCCATTTATTGTTCCCTACCTTCTGTTTGAGAATACCATGTCAGTGACAAAATTCAATGCCATGATTTCTGGCTTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTTGTGACCAAGAAATCGGGCCGTTCTTCTGAGGGCGATCTCGTTTCTCTTGTTGAGAAGCAGCCTAAGCAACAGAGAGTTGGGTCTGCACCCAACCTTGATTCCCTAGCGAAGGAGTCCCATCCGAAAAAGGATTCGAAAAAGAAAAAACACAATAGGATATACCAGAAGGAGCTGGCACTCTCCTTCCTTCTATTAACAGCAGCAGCTCGAAGCCTGCTCTCGGTGCAAGGCATACATTTCTACTTCCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTCGGCCTCGACTTGATCGGCGAGCAAGTCGAGTGATAGAATACATGTGGTATAATCGGTTTCTTTTTTTCTTTGGAGGGGGATATGCAATCAAAGAGAAGTTCTGGTAAAGGGAAAACGATACAGTATTGATGCAAAGACAAGAAGCTCTGGTCCCATTGATGGGGGGTTACAATTCATCGGAGACTCTGAATTGTTGGGGGTGTAGATATATGGCTTTTGGAGTCGGCCTGCAATGATGGTCTTTGATGTCTCAATTCTTTTGTAAGAATTCTCAGTGGTTAGAATGGGTTGTTTCTACTTACTTGACAGTTTACCTTCAAATGGAGATACTGTTATTTTAAATGTACTTTGGCCGATCACTATGGATGCATACTGTGGTACTCAATAGTACACCTTTTGATGAAAGATAGTAA]
consensusID : consensus_8107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1136 fasta sequence
[TGAATGATGTTGAGTGTCAATGTGAGTTGCCAGAATCATATGAAGCGTACAGAAAGCAGCAACACAGGTGGCACTCAGGTCCCATGCAATTGTTCAGACTCTGCTTTGTGGACATTATAAAATCTAAGATTGGGTTCTGGAAGAAGTTCAACCTCATATTCCTTTTCTTCCTCCTCCGCAAGCTCATCCTACCCTTCTATTCATTCACACTTTTCTGTGTCATCCTTCCCATGACAATGTTTGTTCCTGAAGCTGAGCTCCCTGCCTGGGTTGTATGCTACATTCCAGCTACAATGTCCATCCTGAACATCCTCCCAGCCCCAAAATCTTTCCCATTCATTGTCCCATACCTTCTTTTCGAGAACACTATGTCCGTAACCAAGTTCAATGCCATGATTTCTGGATTGTTCCAGCTCGGGAGTGCCTATGAGTGGGTTGTCACCAAGAAATCAGGTCGTTCTTCGGAGGGCGATCTTGTTGGGCTAGTTGAGAAACACTCCAAGCAGCAAAGAGTAGGATCTGCTCCCAATCTTGACGCGCTAACAAAGGAGGAGTCGAATCCTAAAAAGGACTCCAAGAAGAAGAAGCACAATAGGATCTACAGGAAGGAACTGGCACTTTCCTTCCTCTTGTTAACGGCAGCAGCTCGCAGTTTGCTATCTGCTCAGGGAATCCATTTCTACTTTCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTTGGTCTCGACCTAATTGGTGAGCA-AGTGGAGTGATAGAAGATGAAGAGTTTAATGGGGTTCTTTTTTGTTTGAAAGAAAACA-CTTTGCA-AGCATCAAAGGGCTCTTTGTAAAGGGAAGAGTGATGCAAATGTTCGATGCTTACACATGGAAGTTTTGATCCCTATTCTAGGGGTCAAGATTCATCACATATACTGAACTGTGGAGATGTAGATAGATATAGTTTGGATTAAGCCTGTGGGATGCTTTTATTCCTTCAGGCAATTCTTTTGTAAGAATCTTTTGTGCCTAGATGGGTTCTTCTTCTCTCTTAACAAACTTTACCTTCAAATGAAGATAATACATGTTTCTACCATGTACTTTGATCGATTACCTTGGGTATCCATATACATGTCAGATTGTCCTTTTTTTTAAAAAAAA]
[+] EMBL AF435642 [TGAATGATGTTGAGTGTCAATGTGAGTTGCCAGAATCATATGAAGCGTACAGAAAGCAGCAACACAGGTGGCACTCAGGTCCCATGCAATTGTTCAGACTCTGCTTTGTGGACATTATAAAATCTAAGATTGGGTTCTGGAAGAAGTTCAACCTCATATTCCTTTTCTTCCTCCTCCGCAAGCTCATCCTACCCTTCTATTCATTCACACTTTTCTGTGTCATCCTTCCCATGACAATGTTTGTTCCTGAAGCTGAGCTCCCTGCCTGGGTTGTATGCTACATTCCAGCTACAATGTCCATCCTGAACATCCTCCCAGCCCCAAAATCTTTCCCATTCATTGTCCCATACCTTCTTTTCGAGAACACTATGTCCGTAACCAAGTTCAATGCCATGATTTCTGGATTGTTCCAGCTCGGGAGTGCCTATGAGTGGGTTGTCACCAAGAAATCAGGTCGTTCTTCGGAGGGCGATCTTGTTGGGCTAGTTGAGAAACACTCCAAGCAGCAAAGAGTAGGATCTGCTCCCAATCTTGACGCGCTAACAAAGGAGGAGTCGAATCCTAAAAAGGACTCCAAGAAGAAGAAGCACAATAGGATCTACAGGAAGGAACTGGCACTTTCCTTCCTCTTGTTAACGGCAGCAGCTCGCAGTTTGCTATCTGCTCAGGGAATCCATTTCTACTTTCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTTGGTCTCGACCTAATTGGTGAGCA AGTGGAGTGATAGAAGATGAAGAGTTTAATGGGGTTCTTTTTTGTTTGAAAGAAAACA CTTTGCA AGCATCAAAGGGCTCTTTGTAAAGGGAAGAGTGATGCAAATGTTCGATGCTTACACATGGAAGTTTTGATCCCTATTCTAGGGGTCAAGATTCATCACATATACTGAACTGTGGAGATGTAGATAGATATAGTTTGGATTAAGCCTGTGGGATGCTTTTATTCCTTCAGGCAATTCTTTTGTAAGAATCTTTTGTGCCTAGATGGGTTCTTCTTCTCTCTTAACAAACTTTACCTTCAAATGAAGATAATACATGTTTCTACCATGTACTTTGATCGATTACCTTGG ]
[+] EMBL C74862 [TGAATGATGTTGAGTGTCAATGTGAGTNGCCAGAATCATATGAAGCGTACAGAAAGCAGCAACACAGGTGGCACTCAGGTCCCATGCAATTGTTCAGACTCTGCTTTGTGGACATTATAAAATCTAAGATTGGGTTCTGGAAGAAGTTCAACNTCATATNCCTTTTCTTCCTCCTCCGCAAGCTCATCCNACCCNTCTATTCATTCACACTTTTCTGTGTCATCCTTCCCATGACAATGTTTGTNCCTG ]
[+] EMBL BI812378 [ TTGTTAAC GCA CAGCTC CA TTGCTATCTGCTCAGGGAATCCATTTCTACTTTCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTTGGTCTCGACCTAATTGGTGAGCACAGTGGAGTGATAGAAGATGAAGAGTTTAATGGGGTTCTTTTTTGTTTGAAAGAAAACACCTTTGCACAGCATC AAGGGCTCTTTGTAAAGGGAAGAGTGATGC AATGTTCGATGCTTACACATGGAAGCTTTGATCCCTATTCTAGGGGTC AGATTCATCACATATACTGAACTGTGGAGATGTAGATAGATATAGTTTGGATTAAGCCTGTGGGATGCTTTTATTCCTTCAGGCAATTCTTTTGTAAGAATCTTTTGTGCCTAGATGGGTTCTTCTTCTCTCTTAACAAACTTTACCTTCAAATGAAGATAATACATGTTTCTACCATGTACTTTGATCGATTACCTTGGGTATCCATATACATGTCAGATTGTCCTTTTTTTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8107#0 GAGNACAAGGGGTGGAAGTTTCTGTACATTAATGATGTCGAGTGCCAGTGTGAGCTGCCA 60
consensus_8107#1 ----------------------------TGAATGATGTTGAGTGTCAATGTGAGTTGCCA 32
* ******** ***** ** ****** *****
consensus_8107#0 GAGTCATATGAAGCGTACAGAAAGCAGCAACATCGATGGCATTCTGGTCCCATGCAGTTG 120
consensus_8107#1 GAATCATATGAAGCGTACAGAAAGCAGCAACACAGGTGGCACTCAGGTCCCATGCAATTG 92
** ***************************** * ***** ** *********** ***
consensus_8107#0 TTTCGACTCTGTTTTGTCGACATCATCAAATCAAAGATTGGAGTATGGAAGAAGTTCAAC 180
consensus_8107#1 TTCAGACTCTGCTTTGTGGACATTATAAAATCTAAGATTGGGTTCTGGAAGAAGTTCAAC 152
** ******* ***** ***** ** ***** ******** * ***************
consensus_8107#0 CTCATCTTCCTTTTCTTTCTCCTTCGCAAACTCATATTGCCCTTCTATTCCTTCACACTT 240
consensus_8107#1 CTCATATTCCTTTTCTTCCTCCTCCGCAAGCTCATCCTACCCTTCTATTCATTCACACTT 212
***** *********** ***** ***** ***** * *********** *********
consensus_8107#0 TTCTGCATCATCCTTCCCATGACAATGTTTGTCCCTGAAGCTGAGCTCCCTGCATGGGTG 300
consensus_8107#1 TTCTGTGTCATCCTTCCCATGACAATGTTTGTTCCTGAAGCTGAGCTCCCTGCCTGGGTT 272
***** ************************* ******************** *****
consensus_8107#0 GTGTGCTACAT-CCAGCAACCATGTCCTTGCTGAATATTCTCCCAGCACCCAAATCCTTC 359
consensus_8107#1 GTATGCTACATTCCAGCTACAATGTCCATCCTGAACATCCTCCCAGCCCCAAAATCTTTC 332
** ******** ***** ** ****** * ***** ** ******** ** ***** ***
consensus_8107#0 CCATTTATTGTTCCCTACCTTCTGTTTGAGAATACCATGTCAGTGACAAAATTCAATGCC 419
consensus_8107#1 CCATTCATTGTCCCATACCTTCTTTTCGAGAACACTATGTCCGTAACCAAGTTCAATGCC 392
***** ***** ** ******** ** ***** ** ***** ** ** ** *********
consensus_8107#0 ATGATTTCTGGCTTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTTGTGACCAAGAAATCG 479
consensus_8107#1 ATGATTTCTGGATTGTTCCAGCTCGGGAGTGCCTATGAGTGGGTTGTCACCAAGAAATCA 452
*********** ***************** ***** *********** ***********
consensus_8107#0 GGCCGTTCTTCTGAGGGCGATCTCGTTTCTCTTGTTGAGAAGCAGCCTAAGCAACAGAGA 539
consensus_8107#1 GGTCGTTCTTCGGAGGGCGATCTTGTTGGGCTAGTTGAGAAACACTCCAAGCAGCAAAGA 512
** ******** *********** *** ** ******** ** * ***** ** ***
consensus_8107#0 GTTGGGTCTGCACCCAACCTTGATTCCCTAGCGAAGGAG---TCTCATCCGAAAAAGGAT 596
consensus_8107#1 GTAGGATCTGCTCCCAATCTTGACGCGCTAACAAAGGAGGAGTCGAATCCTAAAAAGGAC 572
** ** ***** ***** ***** * *** * ****** ** **** ********
consensus_8107#0 TCGAAAAAGAAAAAACACAATAGGATATACCAGAAGGAGCTGGCACTCTCCTTCCTTCTA 656
consensus_8107#1 TCCAAGAAGAAGAAGCACAATAGGATCTACAGGAAGGAACTGGCACTTTCCTTCCTCTTG 632
** ** ***** ** *********** *** ****** ******** ******** *
consensus_8107#0 TTAACAGCAGCAGCTCGAAGCCTGCTCTCGGTGCAAGGCATACATTTCTACTTCCTTCTG 716
consensus_8107#1 TTAACGGCAGCAGCTCGCAGTTTGCTATCTGCTCAGGGAATCCATTTCTACTTTCTTCTG 692
***** *********** ** **** ** * ** ** ** *********** ******
consensus_8107#0 TTCCAAGGGGTCTCATTCTTGGTTGTCGGCCTCGACTTGATCGGCGAGCAAGTCGAGTGA 776
consensus_8107#1 TTCCAAGGGGTCTCATTCTTGGTTGTTGGTCTCGACCTAATTGGTGAGCAAGTGGAGTGA 752
************************** ** ****** * ** ** ******** ******
consensus_8107#0 TAGAATACATGTGGTATAATCGGTTTCTTTTTTTCTTTGGAGGGGGATA---TGCAATCA 833
consensus_8107#1 TAGAAGATGAAGAGTTTAATGGGGTTCTTTTTTG-TTTGAAAGAAAACACTTTGCAAGCA 811
***** * ** **** ** ********* **** * * * * ***** **
consensus_8107#0 AAGAGAAGTTCTG-GTAAAGGGAAAA-CGATACAG-TATT-GATGCAAAGACA-AGAAGC 888
consensus_8107#1 TCAAAGGGCTCTTTGTAAAGGGAAGAGTGATGCAAATGTTCGATGCTTACACATGGAAGT 871
* * *** ********** * *** ** * ** ***** * *** ****
consensus_8107#0 TCTGGTCCCATTGATGGGGGGTTACAATTCATCGGAGACTCTGAATTGTTGGGGGTGTAG 948
consensus_8107#1 TTTGATCCCTATTCTAGGGG-TCAAGATTCATCACATATACTGAACTGT-GGAGATGTAG 929
* ** **** * * **** * * ******* * * ***** *** ** * *****
consensus_8107#0 ATATATGGCTTTTGGAGTCGGCCTGCA--ATGATGGTCTTTGATGTCTCAATTCTTTTGT 1006
consensus_8107#1 ATAGATATAGTTTGGATTAAGCCTGTGGGATGCTTTTATTCCTTCAGGCAATTCTTTTGT 989
*** ** ****** * ***** *** * * ** * ************
consensus_8107#0 AAGAATTCTCAGTGGTTAGAATGGGTTGTTTCTACTTACTTGACAG--TTTACCTTCAAA 1064
consensus_8107#1 AAGAATCTTTTGTGCCTAGA-TGGGTT-CTTCTTCTCTCTTAACAAACTTTACCTTCAAA 1047
****** * *** **** ****** **** ** *** *** ************
consensus_8107#0 TGGAGATACTGT-TATTTTAA--ATGTACTTTGGCCGATCACTATGGATGCATACTGTGG 1121
consensus_8107#1 TGAAGATAATACATGTTTCTACCATGTACTTTGATCGATTACCTTGGGTATCCATATACA 1107
** ***** * * *** * ********** **** ** *** * *
consensus_8107#0 TACTCAATAGTACACCTTTTGATGAAAGATAGTAA 1156
consensus_8107#1 TGTCAGATTGTCCTTTTTTTTAAAAAAAA------ 1136
* ** ** * **** * *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||