Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8111 cluster # 8111       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8111#0 length = 2621 sequences # 4  
consensus_8111#1 length = 593 sequences # 1  

consensusID : consensus_8111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2621
fasta sequence
                              [GCCGCCGCTCGTCCACAGCTCGCCGCCGCGGCGCCCCTCCCGGCGACGACTGATGCTCCGCCCCCTAGCCGCCTCCACCCCGCCGTCCCCGAGCAGCTCGCCGACGCTGACCAGAGCAGAGGCCCGTACGACGGTCTCCGAACTGCTCGCGAAGTAGGGGAAGCCGCCACCGCGTTGTCGTCGCCTAAGCTTCGCCGGTGCTCGCAGGGTTTTGGTTTGGTTTGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAAGGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGTACTCGTAAAAAAGGGTACAACTTTTGTTGCGCTCTATGGCCTTGGAAACATTAGAGATGAACGATTAAACAGGATGTTTCAGACACCTCATGCTGTACAATGGATGCGACCTGAAACTCAAGATGGAATGTCAGTATCTGACTGGTTCAATATTCTTGTTCTTCATCAGAATAGGATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGGAGGTACCTGGGATGGGTTTTCACATCACTCAACCAGGCTCATCAGTTGCAACCTCCCTGATTGATGGTGAAGCAAAACCAAAGCATGTTCTCTTGTTAGAAATCAAGGGAAACCAGTATAGGCCAACCAAAATACCTTTGAGATCCGTTAGGCCCTTTCACTATGCTGAGGTTGTGTTAAAAGATGAAGTGGATGTTGATCCCAATGATCAGGCCTCTGTTCTTGAACATTTGGATAAAATTGTAAGAAATCTTATTAAGAAGAGTAGTCAGCCAACAGCCAGTAGACCAGAGACCAAACTTCCACTAATTAGAATCAAGGTAGATTACTCTGGGTTTTCAACAATTAATCCACAACGATTTGGTCAGAAGTATGTCGGGAAGGTTGCAAACCCCCAGGATATTCTTATCTTCTCAAAATCAGCAAAAAAGCGTCAGACTACTGGAGTAGGCAATATTGATGACTCTGAGAAACTTCGTCCCGAGGAACTAAACCAACAAACTATTGAAGCTTTGGTTGCCGAAAATAACTTGAAAATGGAGATTCTTCCAGTTGATGACTTGGACATTGCATTGCATGATTTTGTGAGCAAGGATGACAAGATGGCGTTTTATGCCTGTTTGCAGCGGAATCTTGAAGAAACCAGAACTAAATTGAATTCAGAGGCAGATAAATTTAAAATAGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGCAGGAACGTGTGAAGGAAAGGTCCCTCCGCTCCAAGGAAGATTCACGGTTCACGTCAAGCTCTCAAAACTTGGATACTGGAGGTAGATCTGTTACAGCTCAAAGTAACCTGAACTCTTTCAGTGATGATGAAGACACCAGGGAGATGCTTCTCGGTGCAAGAACAACTAATGCTGGAAGGAAAGCATCTGGATTTACAAGACCCTCTAAAGATGCTACCGATGTTGCCAAAACTGGAACTTCCAGAAGGGGCAGGGGAAGAGGGACGGCCTCAATGAAGCAGACCACTCTGAATTTCAGCCAATCAAGGTCAAGTGCTGCTATCCGCAGTGAGGAAGTGCAATCTTCTTCAGATGAGGAAAATGAGACTAATGAAGCAAACGAAGTTGTTGAATCTTCAGAACCGGAGGAGAGTCCCCAACAAACTGGACGGGAAAGGGCAGCTCCTAGAGGTGGTAGAGGTAGGGGTAGAGGCGCTACTGCAAAAAGGGGTAGAAAAGCAGATATTTCATCCATCCAGAGCATGCTGATGAGCAAAGATGATGATGACGATGATGAAGATGACAGGCCGAAGAAACCTCCACCTCGGGTCACTAGGAACTACGGAGCTGTTAGGAGGAGATGACCTCTTGTTAGTCTAAGTCTGCCTGGCAAATTAAGTTTCCAATGAACTACTGGAACGCCAACTCGCGTGATTTGTACATTCCTTAGCCTCATGGATTTACGTGCTTGTAGCTGCTAAATGCTGGATGTCAGTTTGTACATTGGCAACATGACATTCATGCGGGCACAAGGGATTCTCATCATCAATAGTAGGTGTTCTTCAGAGACTAGAA]

[+] EMBL AK070546             [GCCGCCGCTCGTCCACAGCTCGCCGCCGCGGCGCCCCTCCCGGCGACGACTGATGCTCCGCCCCCTAGCCGCCTCCACCCCGCCGTCCCCGAGCAGCTCGCCGACGCTGACCAGAGCAGAGGCCCGTACGACGGTCTCCGAACTGCTCGCGAAGTAGGGGAAGCCGCCACCGCGTTGTCGTCGCCTAAGCTTCGCCGGTGCTCGCAGGGTTTTGGTTTGGTTTGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAAGGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGTACTCGTAAAAAAGGGTACAACTTTTGTTGCGCTCTATGGCCTTGGAAACATTAGAGATGAACGATTAAACAGGATGTTTCAGACACCTCATGCTGTACAATGGATGCGACCTGAAACTCAAGATGGAATGTCAGTATCTGACTGGTTCAATATTCTTGTTCTTCATCAGAATAGGATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGGAGGTACCTGGGATGGGTTTTCACATCACTCAACCAGGCTCATCAGTTGCAACCTCCCTGATTGATGGTGAAGCAAAACCAAAGCATGTTCTCTTGTTAGAAATCAAGGGAAACCAGTATAGGCCAACCAAAATACCTTTGAGATCCGTTAGGCCCTTTCACTATGCTGAGGTTGTGTTAAAAGATGAAGTGGATGTTGATCCCAATGATCAGGCCTCTGTTCTTGAACATTTGGATAAAATTGTAAGAAATCTTATTAAGAAGAGTAGTCAGCCAACAGCCAGTAGACCAGAGACCAAACTTCCACTAATTAGAATCAAGGTAGATTACTCTGGGTTTTCAACAATTAATCCACAACGATTTGGTCAGAAGTATGTCGGGAAGGTTGCAAACCCCCAGGATATTCTTATCTTCTCAAAATCAGCAAAAAAGCGTCAGACTACTGGAGTAGGCAATATTGATGACTCTGAGAAACTTCGTCCCGAGGAACTAAACCAACAAACTATTGAAGCTTTGGTTGCCGAAAATAACTTGAAAATGGAGATTCTTCCAGTTGATGACTTGGACATTGCATTGCATGATTTTGTGAGCAAGGATGACAAGATGGCGTTTTATGCCTGTTTGCAGCGGAATCTTGAAGAAACCAGAACTAAATTGAATTCAGAGGCAGATAAATTTAAAATAGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGCAGGAACGTGTGAAGGAAAGGTCCCTCCGCTCCAAGGAAGATTCACGGTTCACGTCAAGCTCTCAAAACTTGGATACTGGAGGTAGATCTGTTACAGCTCAAAGTAACCTGAACTCTTTCAGTGATGATGAAGACACCAGGGAGATGCTTCTCGGTGCAAGAACAACTAATGCTGGAAGGAAAGCATCTGGATTTACAAGACCCTCTAAAGATGCTACCGATGTTGCCAAAACTGGAACTTCCAGAAGGGGCAGGGGAAGAGGGACGGCCTCAATGAAGCAGACCACTCTGAATTTCAGCCAATCAAGGTCAAGTGCTGCTATCCGCAGTGAGGAAGTGCAATCTTCTTCAGATGAGGAAAATGAGACTAATGAAGCAAACGAAGTTGTTGAATCTTCAGAACCGGAGGAGAGTCCCCAACAAACTGGACGGGAAAGGGCAGCTCCTAGAGGTGGTAGAGGTAGGGGTAGAGGCGCTACTGCAAAAAGGGGTAGAAAAGCAGATATTTCATCCATCCAGAGCATGCTGATGAGCAAAGATGATGATGACGATGATGAAGATGACAGGCCGAAGAAACCTCCACCTCGGGTCACTAGGAACTACGGAGCTGTTAGGAGGAGATGACCTCTTGTTAGTCTAAGTCTGCCTGGCAAATTAAGTTTCCAATGAACTACTGGAACGCCAACTCGCGTGATTTGTACATTCCTTAGCCTCATGGATTTACGTGCTTGTAGCTGCTAAATGCTGGATGTCAGTTTGTACATTGGCAACATGACATTCATGCGGGCACAAGGGAT                                      ]
[+] EMBL CF306418             [                                                                                         CGAGCAGCTCGCCGACGCTGACCAGAGCAGAGGCCCGTACGACGGTCTCCGAACTGCTCGCGAAGTAGGGGAAGCCGCCACCGCGTTGTCGTCGCCTAAGCTTCGCCGGTGCTCGCAGGGTTTTGGTTTGGTTTGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAAGGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB675878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGTACTCGTAAAAAAGGGTACAACTTTTGTTGCGCTCTATGGCCTTGGAAACATTAGAGATGAACGATTAAACAGGATGTTTCAGACACCTCATGCTGTACAATGGATGCGACCTGAAACTCAAGATGGAATGTCAGTATCTGACTGGTTCAATATTCTTGTTCTTCATCAGAATAGGATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGGAGGTACCTGGGATGGGTTTTCACATCACTCAACCAGGCTCATCAGTTGCAACCTCCCTGATTGATGGTGAAGCAAAACCAAAGCATGTTCTCTTGTTAGAAATCAAGGGAAACCAGTATAGGCCAACCAAAATACCTTTGAGATCCGTTAGGCCCTTTCACTATGCTGAGGTTGTGTTAAAAGATGAAGTGGATGTTGATCCCAATGATCAGGCCTCTGTTCTTGAACATTTGGATAANATTGTAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB675879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCACGTCAAGCTCTCAAAACTTGGATACTGGAGGTAGATCTGTTACAGCTCAAAGTAACCTGAACTCTTTCAGTGATGATGAAGACACCAGGGAGATGCTTCTCGGTGCAAGAACAACTAATGCTGGAAGGAAAGCATCTGGATTTACAAGACCCTCTAAAGATGCTACCGATGTTGCCAAAACTGGAACTTCCAGAAGGGGCAGGGGAAGAGGGACGGCCTCAATGAAGCAGACCACTCTGAATTTCAGCCAATCAAGGTCAAGTGCTGCTATCCGCAGTGAGGAAGTGCAATCTTCTTCAGATGAGGAAAATGAGACTAATGAAGCAAACGAAGTTGTTGAATCTTCAGAACCGGAGGAGAGTCCCCAACAAACTGGACGGAAAAGGGCAGCTCCTAGAGGTGGTAGAGGTAGGGGTAGAGGCGCTACTGCAAAAAGGGGTAGAAAAGCAGATATTTCATCCATCCAGAGCATGCTGATGAGCAAAGATGATGATGACGATGATGAAGATGACAGGCCGAAGAAACCTCCACCTCGGGTCACTAGGAACTACGGAGCTGTTAGGAGGAGATGACCTCTTGTTAGTCTAAGTCTGCCTGGCAAATTAAGTTTCCAATGAACTACTGGAACGCCAACTCGCGTGATTTGTACATTCCTTAGCCTCATGGATTTACGTGCTTGTAGCTGCTAAATGCTGGATGTCAGTTTGTACATTGGCAACATGACATTCATGCGGGCACAAGGGATTCTCATCATCAATAGTAGGTGTTCTTCAGAGACTAGAA]


>consensus_8111#0 GCCGCCGCTCGTCCACAGCTCGCCGCCGCGGCGCCCCTCCCGGCGACGACTGATGCTCCG CCCCCTAGCCGCCTCCACCCCGCCGTCCCCGAGCAGCTCGCCGACGCTGACCAGAGCAGA GGCCCGTACGACGGTCTCCGAACTGCTCGCGAAGTAGGGGAAGCCGCCACCGCGTTGTCG TCGCCTAAGCTTCGCCGGTGCTCGCAGGGTTTTGGTTTGGTTTGGTTTGGTCCGTGAGGG TTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGA CGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAA GGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGA GCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTC ACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCC AGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGATTCGGCCAAGT AAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCA TGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCT TGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTA TCCTGTACTCGTAAAAAAGGGTACAACTTTTGTTGCGCTCTATGGCCTTGGAAACATTAG AGATGAACGATTAAACAGGATGTTTCAGACACCTCATGCTGTACAATGGATGCGACCTGA AACTCAAGATGGAATGTCAGTATCTGACTGGTTCAATATTCTTGTTCTTCATCAGAATAG GATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTT TATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGGAGGTACCTGGGATGGG TTTTCACATCACTCAACCAGGCTCATCAGTTGCAACCTCCCTGATTGATGGTGAAGCAAA ACCAAAGCATGTTCTCTTGTTAGAAATCAAGGGAAACCAGTATAGGCCAACCAAAATACC TTTGAGATCCGTTAGGCCCTTTCACTATGCTGAGGTTGTGTTAAAAGATGAAGTGGATGT TGATCCCAATGATCAGGCCTCTGTTCTTGAACATTTGGATAAAATTGTAAGAAATCTTAT TAAGAAGAGTAGTCAGCCAACAGCCAGTAGACCAGAGACCAAACTTCCACTAATTAGAAT CAAGGTAGATTACTCTGGGTTTTCAACAATTAATCCACAACGATTTGGTCAGAAGTATGT CGGGAAGGTTGCAAACCCCCAGGATATTCTTATCTTCTCAAAATCAGCAAAAAAGCGTCA GACTACTGGAGTAGGCAATATTGATGACTCTGAGAAACTTCGTCCCGAGGAACTAAACCA ACAAACTATTGAAGCTTTGGTTGCCGAAAATAACTTGAAAATGGAGATTCTTCCAGTTGA TGACTTGGACATTGCATTGCATGATTTTGTGAGCAAGGATGACAAGATGGCGTTTTATGC CTGTTTGCAGCGGAATCTTGAAGAAACCAGAACTAAATTGAATTCAGAGGCAGATAAATT TAAAATAGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGCAGGAACGTGTGAA GGAAAGGTCCCTCCGCTCCAAGGAAGATTCACGGTTCACGTCAAGCTCTCAAAACTTGGA TACTGGAGGTAGATCTGTTACAGCTCAAAGTAACCTGAACTCTTTCAGTGATGATGAAGA CACCAGGGAGATGCTTCTCGGTGCAAGAACAACTAATGCTGGAAGGAAAGCATCTGGATT TACAAGACCCTCTAAAGATGCTACCGATGTTGCCAAAACTGGAACTTCCAGAAGGGGCAG GGGAAGAGGGACGGCCTCAATGAAGCAGACCACTCTGAATTTCAGCCAATCAAGGTCAAG TGCTGCTATCCGCAGTGAGGAAGTGCAATCTTCTTCAGATGAGGAAAATGAGACTAATGA AGCAAACGAAGTTGTTGAATCTTCAGAACCGGAGGAGAGTCCCCAACAAACTGGACGGGA AAGGGCAGCTCCTAGAGGTGGTAGAGGTAGGGGTAGAGGCGCTACTGCAAAAAGGGGTAG AAAAGCAGATATTTCATCCATCCAGAGCATGCTGATGAGCAAAGATGATGATGACGATGA TGAAGATGACAGGCCGAAGAAACCTCCACCTCGGGTCACTAGGAACTACGGAGCTGTTAG GAGGAGATGACCTCTTGTTAGTCTAAGTCTGCCTGGCAAATTAAGTTTCCAATGAACTAC TGGAACGCCAACTCGCGTGATTTGTACATTCCTTAGCCTCATGGATTTACGTGCTTGTAG CTGCTAAATGCTGGATGTCAGTTTGTACATTGGCAACATGACATTCATGCGGGCACAAGG GATTCTCATCATCAATAGTAGGTGTTCTTCAGAGACTAGAA



consensusID : consensus_8111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [TGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAATGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGGTTTTGACGATGAATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGGTACAACTTTTGTTGCG]

[+] EMBL CF303544             [TGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAATGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGGTTTTGACGATGAATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGGTACAACTTTTGTTGCG]


>consensus_8111#1 TGGTTTGGTCCGTGAGGGTTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACC AACACCGGCAATGGGAGACGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCA TCTCGGCTACATGGAAAATGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGA GATATGCTCATTAGCAGAGCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTT CCATGAGAACAAACCTTCACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTA CTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCC AAACAGGTTTTGACGATGAATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTG GATTGCCTGTGTTCACTATCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCT CTGCAATTGATATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTG GTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGGTACAACTTTTGTTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8111#0      GCCGCCGCTCGTCCACAGCTCGCCGCCGCGGCGCCCCTCCCGGCGACGACTGATGCTCCG 60
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CCCCCTAGCCGCCTCCACCCCGCCGTCCCCGAGCAGCTCGCCGACGCTGACCAGAGCAGA 120
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      GGCCCGTACGACGGTCTCCGAACTGCTCGCGAAGTAGGGGAAGCCGCCACCGCGTTGTCG 180
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TCGCCTAAGCTTCGCCGGTGCTCGCAGGGTTTTGGTTTGGTTTGGTTTGGTCCGTGAGGG 240
consensus_8111#1      ------------------------------------------TGGTTTGGTCCGTGAGGG 18
                                                                ******************

consensus_8111#0      TTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGA 300
consensus_8111#1      TTTGATCAGGAAAGTGCTTGGGCTCAAGTCTGAAGCTGAACCAACACCGGCAATGGGAGA 78
                      ************************************************************

consensus_8111#0      CGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAA 360
consensus_8111#1      CGAAAGCAACACACTCCGTGTACTTGTGGCAACCGATTGCCATCTCGGCTACATGGAAAA 138
                      ************************************************************

consensus_8111#0      GGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGA 420
consensus_8111#1      TGACGAGATTCGTAGGTTTGATTCATTTGAGGCGTTTGAAGAGATATGCTCATTAGCAGA 198
                       ***********************************************************

consensus_8111#0      GCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTC 480
consensus_8111#1      GCAGAATAAGGTTGATTTTGTGCTACTTGGTGGTGACCTTTTCCATGAGAACAAACCTTC 258
                      ************************************************************

consensus_8111#0      ACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCC 540
consensus_8111#1      ACGTTCAACCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCC 318
                      ************************************************************

consensus_8111#0      AGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAG------------ 588
consensus_8111#1      AGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGGTTTTGACGATG 378
                      ************************************************            

consensus_8111#0      -ATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTA 647
consensus_8111#1      AATTCGGCCAAGTAAATTATGAAGATCCAAACTTCAATGTTGGATTGCCTGTGTTCACTA 438
                       ***********************************************************

consensus_8111#0      TCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCT 707
consensus_8111#1      TCCATGGAAACCATGATGATCCAGCTGGTGTGGATAATCTCTCTGCAATTGATATTCTCT 498
                      ************************************************************

consensus_8111#0      CAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTG 767
consensus_8111#1      CAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTG 558
                      ************************************************************

consensus_8111#0      AAATAGCAGTCTATCCTGTACTCGTAAAAAAGGGTACAACTTTTGTTGCGCTCTATGGCC 827
consensus_8111#1      AAATAGCAGTCTATCCTG---------------GTACAACTTTTGTTGCG---------- 593
                      ******************               *****************          

consensus_8111#0      TTGGAAACATTAGAGATGAACGATTAAACAGGATGTTTCAGACACCTCATGCTGTACAAT 887
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      GGATGCGACCTGAAACTCAAGATGGAATGTCAGTATCTGACTGGTTCAATATTCTTGTTC 947
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TTCATCAGAATAGGATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCAC 1007
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      GTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGGAGG 1067
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TACCTGGGATGGGTTTTCACATCACTCAACCAGGCTCATCAGTTGCAACCTCCCTGATTG 1127
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      ATGGTGAAGCAAAACCAAAGCATGTTCTCTTGTTAGAAATCAAGGGAAACCAGTATAGGC 1187
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CAACCAAAATACCTTTGAGATCCGTTAGGCCCTTTCACTATGCTGAGGTTGTGTTAAAAG 1247
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      ATGAAGTGGATGTTGATCCCAATGATCAGGCCTCTGTTCTTGAACATTTGGATAAAATTG 1307
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TAAGAAATCTTATTAAGAAGAGTAGTCAGCCAACAGCCAGTAGACCAGAGACCAAACTTC 1367
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CACTAATTAGAATCAAGGTAGATTACTCTGGGTTTTCAACAATTAATCCACAACGATTTG 1427
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      GTCAGAAGTATGTCGGGAAGGTTGCAAACCCCCAGGATATTCTTATCTTCTCAAAATCAG 1487
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CAAAAAAGCGTCAGACTACTGGAGTAGGCAATATTGATGACTCTGAGAAACTTCGTCCCG 1547
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AGGAACTAAACCAACAAACTATTGAAGCTTTGGTTGCCGAAAATAACTTGAAAATGGAGA 1607
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TTCTTCCAGTTGATGACTTGGACATTGCATTGCATGATTTTGTGAGCAAGGATGACAAGA 1667
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TGGCGTTTTATGCCTGTTTGCAGCGGAATCTTGAAGAAACCAGAACTAAATTGAATTCAG 1727
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AGGCAGATAAATTTAAAATAGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGC 1787
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AGGAACGTGTGAAGGAAAGGTCCCTCCGCTCCAAGGAAGATTCACGGTTCACGTCAAGCT 1847
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CTCAAAACTTGGATACTGGAGGTAGATCTGTTACAGCTCAAAGTAACCTGAACTCTTTCA 1907
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      GTGATGATGAAGACACCAGGGAGATGCTTCTCGGTGCAAGAACAACTAATGCTGGAAGGA 1967
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AAGCATCTGGATTTACAAGACCCTCTAAAGATGCTACCGATGTTGCCAAAACTGGAACTT 2027
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CCAGAAGGGGCAGGGGAAGAGGGACGGCCTCAATGAAGCAGACCACTCTGAATTTCAGCC 2087
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AATCAAGGTCAAGTGCTGCTATCCGCAGTGAGGAAGTGCAATCTTCTTCAGATGAGGAAA 2147
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      ATGAGACTAATGAAGCAAACGAAGTTGTTGAATCTTCAGAACCGGAGGAGAGTCCCCAAC 2207
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      AAACTGGACGGGAAAGGGCAGCTCCTAGAGGTGGTAGAGGTAGGGGTAGAGGCGCTACTG 2267
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      CAAAAAGGGGTAGAAAAGCAGATATTTCATCCATCCAGAGCATGCTGATGAGCAAAGATG 2327
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      ATGATGACGATGATGAAGATGACAGGCCGAAGAAACCTCCACCTCGGGTCACTAGGAACT 2387
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      ACGGAGCTGTTAGGAGGAGATGACCTCTTGTTAGTCTAAGTCTGCCTGGCAAATTAAGTT 2447
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TCCAATGAACTACTGGAACGCCAACTCGCGTGATTTGTACATTCCTTAGCCTCATGGATT 2507
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TACGTGCTTGTAGCTGCTAAATGCTGGATGTCAGTTTGTACATTGGCAACATGACATTCA 2567
consensus_8111#1      ------------------------------------------------------------
                                                                                  

consensus_8111#0      TGCGGGCACAAGGGATTCTCATCATCAATAGTAGGTGTTCTTCAGAGACTAGAA 2621
consensus_8111#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)