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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1272 fasta sequence
[TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA]
[+] EMBL AK101419 [TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAA ]
[+] EMBL OS0279A [ CAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGG GGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTT ]
[-] EMBL CF278506 [ CCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAA ]
[+] EMBL OSC027915 [ GATNCGGCCGAGACCGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGNAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA]
consensusID : consensus_8119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence
[GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA]
[-] EMBL AK068788 [GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8119#0 TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 60
consensus_8119#1 -GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 59
**********************************************************
consensus_8119#0 GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 120
consensus_8119#1 GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 119
************************************************************
consensus_8119#0 GGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTT 180
consensus_8119#1 GGAACTAGTGAAG-----GTATACAGACTTCTCATGTGAATA-------------TCCAT 161
************* * ** ** * * ** * * * * *
consensus_8119#0 GAGCTCTGAAGACTATAAGAAGATGGAATAT-ACCCAACATGTAAGATGATCGTTCAATA 239
consensus_8119#1 G-----------CCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAA 210
* * * * *** ** ** * * * * * * ** ** *
consensus_8119#0 CATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTAC 299
consensus_8119#1 CCTGTGC-------AGATGGAGAATCGATGGCGA-TGACATTCCGATGGC--------AT 254
* ** ** * * * * ** * **** ** *
consensus_8119#0 ACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCC 359
consensus_8119#1 ACCCGTACGTGGAGTTCCAGA---GAGGTCTGCCCATA--GAAATCGAGCCACTT-TGCT 308
** ** *** *** * ***** * * **** * * *** * * * ***
consensus_8119#0 TACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAG 419
consensus_8119#1 C-----TGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGA 363
* ** * ** *** **** * * ** * * * * * *
consensus_8119#0 AATCTCATTACAATA--GAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAA-- 475
consensus_8119#1 TATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACA 423
** * * * ** ** ** ** ** * * * * * * ** **
consensus_8119#0 ------ACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAG 529
consensus_8119#1 TCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAG---------GGA 474
***** * * * *** ****** * ** ** *** *
consensus_8119#0 ATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGA 589
consensus_8119#1 ATTTCGGAGCA--GACAAATTCGATCGTGGATAATCCCT-------ATCA---ATCGGAG 522
** * * * ** * *** ** * * * * * ** *** *
consensus_8119#0 GTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCC 649
consensus_8119#1 ATGGCTGGTCCCGTTTGGATTGGAGGAATT-----TCTGAAGGAATCCTTTCATCGCTAG 577
* *** * ** * *** * * *** * * * ** * * *
consensus_8119#0 CTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGG 709
consensus_8119#1 ACGATTTCACGGGA-----TAACAGTCCCCGAATCCACCACGCGTAACCTC--GCCCAGG 630
* **** ** * **** * * * * * * * *** ***
consensus_8119#0 GACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCT 769
consensus_8119#1 ATCGAGGCCGAATTCCA-GCCGA--AGCCGCGCCGCGCCG-TCGTCCCCGTATCCAATCC 686
* ** *** * * **** ** * * * * * * ** *** * *** * *
consensus_8119#0 TGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAAT 829
consensus_8119#1 ----ACCGCGGCGTCGACT--CTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCC 740
* * * * * ** ** ** ** * * ** *** * * *
consensus_8119#0 CGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCAT 889
consensus_8119#1 CGCCTCTAGCGGCGC-CCGCAGGATCATCTGCACACC---CCCGCGCGACACCGCCGCCC 796
** * * *** ** * * * ** * * ** * * *
consensus_8119#0 AGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCG 949
consensus_8119#1 GCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA--------------- 841
* * *** ** * ** ** * *
consensus_8119#0 AGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGA 1009
consensus_8119#1 ------------------------------------------------------------
consensus_8119#0 GGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACT 1069
consensus_8119#1 ------------------------------------------------------------
consensus_8119#0 GAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATG 1129
consensus_8119#1 ------------------------------------------------------------
consensus_8119#0 GTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCC 1189
consensus_8119#1 ------------------------------------------------------------
consensus_8119#0 TGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNA 1249
consensus_8119#1 ------------------------------------------------------------
consensus_8119#0 NNAAATTGGGCTATTGGGCTNAA 1272
consensus_8119#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||