These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence [GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCTCATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTTGACAACCAACCTTAAA] [+] EMBL CB621071 [GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAGACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCC ] [-] EMBL CB627612 [ CCTCAGACT TCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACT ] [-] EMBL CB621072 [ TTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCTCATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTTGACAACCAACCTTAAA] consensusID : consensus_8123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 953 fasta sequence [AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGCCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGTTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTAGCTGCTCAGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACATCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT] [+] EMBL AK058944 [AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGCCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGTTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTAGCTGCTCAGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACATCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT] [+] EMBL OSR3341A [ CCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8123#0 GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTT 60 consensus_8123#1 -----AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTT 55 ***************************************************** consensus_8123#0 ATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAA 120 consensus_8123#1 ATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAA 115 ******** *************************************************** consensus_8123#0 TGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGT 180 consensus_8123#1 TGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGC 175 ********************************************************* * consensus_8123#0 CAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTG 240 consensus_8123#1 CAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTG 235 ************************************************ *********** consensus_8123#0 ATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTC 300 consensus_8123#1 ATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTC 295 ************* ********************************************** consensus_8123#0 AATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTC 360 consensus_8123#1 AATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTC 355 ************************************************************ consensus_8123#0 TGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCC 420 consensus_8123#1 TGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCC 415 ******************* ************* ******* ****************** consensus_8123#0 ATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGG 480 consensus_8123#1 ATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGG 475 ************************************************************ consensus_8123#0 -------------------------------CTGCAAGGGACAAGGTCACTCTGCAGACT 509 consensus_8123#1 TTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACT 535 ***************************** consensus_8123#0 AGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAG 569 consensus_8123#1 AGTAGCTGCTC--AGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAG 593 *** ******* ***************** ***** ***************** ***** consensus_8123#0 TTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCA-CA 628 consensus_8123#1 TTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACA 653 ********************************************** ********** ** consensus_8123#0 TCTTCTG-TTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCT 687 consensus_8123#1 TCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCT 713 ******* **************************************************** consensus_8123#0 ACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAAT 747 consensus_8123#1 ACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAAT 773 ************************************************************ consensus_8123#0 TTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCA 807 consensus_8123#1 TTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCA 833 ************************************************************ consensus_8123#0 TGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCAT 867 consensus_8123#1 TGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCAT 893 ********************** ************************************* consensus_8123#0 GAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCT 927 consensus_8123#1 GAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT 953 ******************* ********** ******* ******************** consensus_8123#0 CATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTT 987 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 GACAACCAACCTTAAA 1003 consensus_8123#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||