These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 532 fasta sequence [ACCCTGGTAGTGCCCAACTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCAT-CCATATCTCCAACC-AAC-ATAGCA-ATGGGCAATATGGATCCGTGTA-GCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA-TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA-ACATGCAATATGCTATTTGTGGTGGACTTGGCCAAC-ACAAATGATGATGAAGATGGCGA-TGCAACTT-CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAAAAAAAAAAA] [+] EMBL BI798695 [ACCCTGGTAGTGCCCAACATGCAGCATAC AGATCTT GCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGC CCGCTACTACAATCACCACCAT CCATATCTCCAACC AC ATA CA AT GGCAATATGGATCCGTGTA GCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTATTTGTGGTGGACTTGGCCAAC ACAAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCCTGAAATAAAGTTTCGATTTATGTTCAAAAAAAA ] [+] EMBL AU082975 [ TGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCATGCCATATCTCCAACC AACAATAGCA ATGGGCAATATGGATCCGTGTAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTATTTGTGGTGGACTTGGCCAACAACAAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAATAAAAAA ] [+] EMBL C73616 [ aTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCATGCCATATCTCCAACC AACAATAGCA ATGGGCAATATGGATCCGTGTAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTANTTGTGGTGGACTTGGCCAACAACNAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTNTAGCANGG CCCTGCCTACTTCCAG TCTCTCCCTATGGTTGTTG TAACC AACCTT ] [+] EMBL BI795184 [ CCATATCTCCAACCTACC ATAGCACATGGGCAATATGGATCCGTGTA GCAGTACATGATGCCAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCCATTGCTCTCCGGCAACGATAGTGTTGCATGCAGCTACAAGGCATGAGTGCCACAGTGCCCGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAGACATGC ATATGCTATTTGTGGTGGACTTGGCCACA ACAAATGATGATGAAGATGGCGAGTGCAACTTCCCAACCGTGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCCAACCTTGGTTACATGTACTCC ACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCCAAAAAAAAAA] consensusID : consensus_8126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAATGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759532 [GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAATGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8126#0 ACCCTGGTAGTGCCCAACTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTC 60 consensus_8126#1 ------------------------------------------------------------ consensus_8126#0 TTTCTGCAAGCGCCGCTACTACAATCACCACCAT-CCATATCTCCAACCAACA-TAGCAA 118 consensus_8126#1 --------------GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAA 46 * **** ****** ****************** ****** consensus_8126#0 TGGGCAATATGGATCCGTGTAG-CAGTACATGATGCAAACGACGGGCACAGATAGCTACG 177 consensus_8126#1 TGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACG 106 ******************* ** ************************************* consensus_8126#0 CAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTAC 237 consensus_8126#1 CAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTAC 166 ***************************** ****************************** consensus_8126#0 AAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACA 297 consensus_8126#1 AAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACA 226 ************************************************************ consensus_8126#0 TGCAATATGCTATTTGTGGTGGACTTGGCCAACA-CAAATGATGATGAAGATGGCGATGC 356 consensus_8126#1 TGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGC 286 ********************** *********** ************************* consensus_8126#0 AACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTT 416 consensus_8126#1 AACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTT 346 ************************************************************ consensus_8126#0 GTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCG 476 consensus_8126#1 GTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCG 406 ********************************* *************** ********** consensus_8126#0 ACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAAAAAAAAAAA--- 532 consensus_8126#1 ACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA 465 *********************************** **** *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||