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Oryza sativa
cluster # 8127 cluster # 8127       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8127#0 length = 2140 sequences # 5  

consensusID : consensus_8127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2140
fasta sequence
                              [CCCTAACCGCAGCGACGCACTCCACCTCCTCCTCCACCACGCCGCCGGCGGCCGGGCGCCATGGTGAAGGCCTACCTCCGGTACGAGCCGGCGATCTCCTTCGGCGTGGTCGCCTCCCCGGAGTCCAACGTCGCGTACGACCCCTCCGGCCGCCTCCTCCTCGCCGCCGCCCTCGACCGCTTCGCCGCCTGGGACCTCAAGCGCGGCCTCCCCTCCCTCTCCTTCGCCACCGCCGCCCCGTCCCCCTCCCTCGCCGTCTCCTGCCTCGCCACCTTCCCCTCCGCCGCCTCCGCCTCCGCCTCCTCGATTGCGAGTGGGCACGCCGATGGGAGCATCAGGCTATGGGACACGGAGACCGGCTCCTGTGAGGCGACCCTCCATGGCCACCGCTCTGCGGCTTCCGCCCTCGTATTCGGCCCCTCTGGCGCCATCATCGCCTCTGGCAGTAAGGACTGTGACATTATCCTTTGGGATGTAGTTGGACAGGCCGGCCTTTATCGACTCCGTGGCCACCGTGATCAGGTCACGGGTTTGGTGTTTCTGGATTCAGGGAAGAAACTAGTGAGCTGCTCCAAGGATAAGTTAATCCGGGTTTGGGACCTTGACACGCAGCACTGCCTTCAGATTGTTGGTGGCCACCGCAGTGAAATATGGTCAATTGATGTGGATCCCAGCGAGAGGTTTTTGGTGTCTGGGTCGGCCGATCAAGAGCTGCGGGTGTTTACGGTCCGGAAATCTGCTGAGGAGGGTGAGGATTGGAGCAAGTGGGATATGCTGAAGCTATTTGGTGAGATTCCAAGGCAAAGCAAGGAAAGGGTAGCGACTGTTAAGTTCAATAAGAACGGTAATCTTGTGGCATGCCAGGTGGCTGGGAAGACGGTGGATATTTATAGGGTTCTTGATGAAACAGAGGCAGCACGGAAGGCCAAGAGGAGGATGCACAGAAAGAAGGAGAAGGCTTTGGCCAAATCCATGGCTGCTGAAGGGAATGGTACTGTTATAGATCCTTTGTCGGCTCAAGACTTGCAGAATCCCACTCCTGTTGTCACCGATATATTTAAGCTTCTCCATGTTTTGCGGGTTAACAAGAAAATTTGCTCTGTCGCATTTTCTCCAAACAATCCACCAAAAGGTTGCCTTGCCACCTTGTCTCTATCTCTGAATAATAACATGCTTGAGACATACTCAGTGGATAATGAGAATGTGTCGAATATGTATTCCATTGAGATGCATGGACACCGTTCTGATATTAGGAGTCTTGCACTTAACTCAGAGGACAACCTCCTGATGTCAACAAGTCACAATGCTGTTAAGATATGGAATCCTAGTACTGGCGACTGTCTCCGGACAATTGATTCTGATTATGGATTGTGCAGTGCATTTGTTCCTGGAAATCGGTATGCCCTTGTAGGCACAAAGAGTGGTACTTTGGAGATTATAGATATTAATAGTGGAAGCTCTATTGAGGTTATAGAAGCTCATGCTGGTTCCATACGATCAATTGTACTCATTCCAAACGAGGATGGAACTGCTGGTGCATGGGGTTTTGTCACTGGAAGTGCTGATCATGATGTCAAGTTCTGGGAATACCAATTGATGCAGAAATCTGATAATGACTCTAAGCAGCTGAGCGTAACAAATGTCAAAACTTTGAAAATGAATGACGATGTCCTTGCAGTAACCATCAGTCCAACTGGGAATCATATTGCTGTTGCTCTCTTGGATGGCGCAGTCAAGGTCTTCACTATGGACTCACTGAAGTTTGCCCTTACCCTTTATGGCCACAAACTTCCAGTTCTCTGCATGGATATATCATCCGATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTGAAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGTGTGATGGATGTTAAGTTTGTTTCTAAAACACATTATATGTTCAGTGTTGGGAAAGACCGCACTGTAAAGTACTGGGATGCTGATAAATTCGAGTTGTTGTTAACACTGGAAGGACACCATGCTGAAGTTTGGTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCATGACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAAC]

[+] EMBL AK101270             [CCCTAACCGCAGCGACGCACTCCACCTCCTCCTCCACCACGCCGCCGGCGGCCGGGCGCCATGGTGAAGGCCTACCTCCGGTACGAGCCGGCGATCTCCTTCGGCGTGGTCGCCTCCCCGGAGTCCAACGTCGCGTACGACCCCTCCGGCCGCCTCCTCCTCGCCGCCGCCCTCGACCGCTTCGCCGCCTGGGACCTCAAGCGCGGCCTCCCCTCCCTCTCCTTCGCCACCGCCGCCCCGTCCCCCTCCCTCGCCGTCTCCTGCCTCGCCACCTTCCCCTCCGCCGCCTCCGCCTCCGCCTCCTCGATTGCGAGTGGGCACGCCGATGGGAGCATCAGGCTATGGGACACGGAGACCGGCTCCTGTGAGGCGACCCTCCATGGCCACCGCTCCGCGGCTTCCGCCCTCGTATTCGGCCCCTCTGGCGCCATCATCGCCTCTGGCAGTAAGGACTGTGACATTATCCTTTGGGATGTAGTTGGACAGGCCGGCCTTTATCGACTCCGTGGCCACCGTGATCAGGTCACGGGTTTGGTGTTTCTGGATTCAGGGAAGAAACTAGTGAGCTGCTCCAAGGATAAGTTAATCCGGGTTTGGGACCTTGACACGCAGCACTGCCTTCAGATTGTTGGTGGCCACCGCAGTGAAATATGGTCAATTGATGTGGATCCCAGCGAGAGGTTTTTGGTGTCTGGGTCGGCCGATCAAGAGCTGCGGGTGTTTACGGTCCGGAAATCTGCTGAGGAGGGTGAGGATTGGAGCAAGTGGGATATGCTGAAGCTATTTGGTGAGATTCCAAGGCAAAGCAAGGAAAGGGTAGCGACTGTTAAGTTCAATAAGAACGGTAATCTTGTGGCATGCCAGGTGGCTGGGAAGACGGTGGATATTTATAGGGTTCTTGATGAAACAGAGGCAGCACGGAAGGCCAAGAGGAGGATGCACAGAAAGAAGGAGAAGGCTTTGGCCAAATCCATGGCTGCTGAAGGGAATGGTACTGTTATAGATCCTTTGTCGGCTCAAGACTTGCAGAATCCCACTCCTGTTGTCACCGATATATTTAAGCTTCTCCATGTTTTGCGGGTTAACAAGAAAATTTGCTCTGTCGCATTTTCTCCAAACAATCCACCAAAAGGTTGCCTTGCCACCTTGTCTCTATCTCTGAATAATAACATGCTTGAGACATACTCAGTGGATAATGAGAATGTGTCGAATATGTATTCCATTGAGATGCATGGACACCGTTCTGATATTAGGAGTCTTGCACTTAACTCAGAGGACAACCTCCTGATGTCAACAAGTCACAATGCTGTTAAGATATGGAATCCTAGTACTGGCGACTGTCTCCGGACAATTGATTCTGATTATGGATTGTGCAGTGCATTTGTTCCTGGAAATCGGTATGCCCTTGTAGGCACAAAGAGTGGTACTTTGGAGATTATAGATATTAATAGTGGAAGCTCTATTGAGGTTATAGAAGCTCATGCTGGTTCCATACGATCAATTGTACTCATTCCAAACGAGGATGGAACTGCTGGTGCATGGGGTTTTGTCACTGGAAGTGCTGATCATGATGTCAAGTTCTGGGAATACCAATTGATGCAGAAATCTGATAATGACTCTAAGCAGCTGAGCGTAACAAATGTCAAAACTTTGAAAATGAATGACGATGTCCTTGCAGTAACCATCAGTCCAACTGGGAATCATATTGCTGTTGCTCTCTTGGATGGCGCAGTCAAGGTCTTCACTATGGACTCACTGAAGTTTGCCCTTACCCTTTATGGCCACAAACTTCCAGTTCTCTGCATGGATATATCATCCGATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTGAAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGTGTGATGGATGTTAAGTTTGTTTCTAAAACACATTATATGTTCAGTGTTGGGAAAGACCGCACTGTAAAGTACTGGGATGCTGATAAATTCGAGTTGTTGTTAACACTGGAAGGACACCATGCTGAAGTTTGGTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCATGACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAAC]
[+] EMBL CB639116             [               CGCACTCCACCTCCTCCTCCACCACGCCGCCGGCGGCCGGGCGCCATGGTGAAGGCCTACCTCCGGTACGAGCCGGCGATCTCCTTCGGCGTGGTCGCCTCCCCGGAGTCCAACGTCGCGTACGACCCCTCCGGCCGCCTCCTCCTCGCCGCCGCCCTCGACCGCTTCGCCGCCTGGGACCTCAAGCGCGGCCTCCCCTCCCTCTCCTTCGCCACCGCCGCCCCGTCCCCCTCCCTCGCCGTCTCCTGCCTCGCCACCTTCCCCTCCGCCGCCTCCGCCTCCGCCTCCTCGATTGCGAGTGGGCACGCCGATGGGAGCATCAGGCTATGGGACACGGAGACCGGCTCCTGTGAGGCGACCCTCCATGGCCACCGCTCTGCGGCTTCCGCCCTCGTATTCGGCCCCTCTGGCGCCATCATCGCCTCTGGCAGTAAGGACTGTGACATTATCCTTTGGGATGTAGTTGGACAGGCCGGCCTTTATCGACTCCGTGGCCACCGTGATCAGGTCACGGGTTTGGTGTTTCTGGATTCAAGGAAGAAACTAGTGAGCTGCTCCAAGGATAAGTTAATCCGGGTTTTGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB640339             [               CGCACTCCACCTCCTCCTCCACCACGCCGCCGGCGGCCGGGCGCCATGGTGAAGGCCTACCTCCGGTACGAGCCGGCGATCTCCTTCGGCGTGGTCGCCTCCCCGGAGTCCAACGTCGCGTACGACCCCTACGGCCGCCTCCTCCTCGCCGACGCCCTCGACCGTTTCGCCGCCTGGGACCTCAAGCGCGGCCTACCCTCCCTCTGCTTCGCCACCGTCGCCCCGTCCCCCTCCCTCGCCGTATACTGCCTCGCCACCTTCCCCTCCGCCGCCTCCTCCTCCGCCTGCTCGATTGCGAGTGGGCACGCCGATGGGAGCATCAGGCTATGGGACACGGAGACCGGCTCCTGTGAGGCGACCCTTCATGGCCACCGCTCTGCGGCTTCCGACCTCGTATTCGGCCCCTCTGGCGCCATCATCGTCTTTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK111951             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCTCTCTTGGATGGCGCAGTCAAGGTCTTCACTATGGACTCACTGAAGTTTGCCCTTACCCTTTATGGCCACAAACTTCCAGTTCTCTGCATGGATATATCATCCGATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTGAAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGTGTGATGGATGTTAAGTTTGTTTCTAAAACACATTATATGTTCAGTGTTGGGAAAGACCGCACTGTAAAGTACTGGGATGCTGATAAATTCGAGTTGTTGTTAACACTGGAAGGACACCATGCTGAAGTTTGGTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCATGACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAAC]
[+] EMBL C72639               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TATGGCCACAAACTTCCAGTTCTCTGCATGGATATATCATCCGATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTGAAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGTGTGATGGATGTTAAGTTTGTTTCTAAAACACATTATATGTTCAGTGTTGGGAAAGACCGCACTGTAAAGTACTGGGATGCTGATAAATTCGAGTTGTTGTTAACACTGGAAGGACACCATGCTGAAGTTTGGTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCATGACCGCTCTATTCGGCGTTGGGATCGTACTGAAG ACAAC]


>consensus_8127#0 CCCTAACCGCAGCGACGCACTCCACCTCCTCCTCCACCACGCCGCCGGCGGCCGGGCGCC ATGGTGAAGGCCTACCTCCGGTACGAGCCGGCGATCTCCTTCGGCGTGGTCGCCTCCCCG GAGTCCAACGTCGCGTACGACCCCTCCGGCCGCCTCCTCCTCGCCGCCGCCCTCGACCGC TTCGCCGCCTGGGACCTCAAGCGCGGCCTCCCCTCCCTCTCCTTCGCCACCGCCGCCCCG TCCCCCTCCCTCGCCGTCTCCTGCCTCGCCACCTTCCCCTCCGCCGCCTCCGCCTCCGCC TCCTCGATTGCGAGTGGGCACGCCGATGGGAGCATCAGGCTATGGGACACGGAGACCGGC TCCTGTGAGGCGACCCTCCATGGCCACCGCTCTGCGGCTTCCGCCCTCGTATTCGGCCCC TCTGGCGCCATCATCGCCTCTGGCAGTAAGGACTGTGACATTATCCTTTGGGATGTAGTT GGACAGGCCGGCCTTTATCGACTCCGTGGCCACCGTGATCAGGTCACGGGTTTGGTGTTT CTGGATTCAGGGAAGAAACTAGTGAGCTGCTCCAAGGATAAGTTAATCCGGGTTTGGGAC CTTGACACGCAGCACTGCCTTCAGATTGTTGGTGGCCACCGCAGTGAAATATGGTCAATT GATGTGGATCCCAGCGAGAGGTTTTTGGTGTCTGGGTCGGCCGATCAAGAGCTGCGGGTG TTTACGGTCCGGAAATCTGCTGAGGAGGGTGAGGATTGGAGCAAGTGGGATATGCTGAAG CTATTTGGTGAGATTCCAAGGCAAAGCAAGGAAAGGGTAGCGACTGTTAAGTTCAATAAG AACGGTAATCTTGTGGCATGCCAGGTGGCTGGGAAGACGGTGGATATTTATAGGGTTCTT GATGAAACAGAGGCAGCACGGAAGGCCAAGAGGAGGATGCACAGAAAGAAGGAGAAGGCT TTGGCCAAATCCATGGCTGCTGAAGGGAATGGTACTGTTATAGATCCTTTGTCGGCTCAA GACTTGCAGAATCCCACTCCTGTTGTCACCGATATATTTAAGCTTCTCCATGTTTTGCGG GTTAACAAGAAAATTTGCTCTGTCGCATTTTCTCCAAACAATCCACCAAAAGGTTGCCTT GCCACCTTGTCTCTATCTCTGAATAATAACATGCTTGAGACATACTCAGTGGATAATGAG AATGTGTCGAATATGTATTCCATTGAGATGCATGGACACCGTTCTGATATTAGGAGTCTT GCACTTAACTCAGAGGACAACCTCCTGATGTCAACAAGTCACAATGCTGTTAAGATATGG AATCCTAGTACTGGCGACTGTCTCCGGACAATTGATTCTGATTATGGATTGTGCAGTGCA TTTGTTCCTGGAAATCGGTATGCCCTTGTAGGCACAAAGAGTGGTACTTTGGAGATTATA GATATTAATAGTGGAAGCTCTATTGAGGTTATAGAAGCTCATGCTGGTTCCATACGATCA ATTGTACTCATTCCAAACGAGGATGGAACTGCTGGTGCATGGGGTTTTGTCACTGGAAGT GCTGATCATGATGTCAAGTTCTGGGAATACCAATTGATGCAGAAATCTGATAATGACTCT AAGCAGCTGAGCGTAACAAATGTCAAAACTTTGAAAATGAATGACGATGTCCTTGCAGTA ACCATCAGTCCAACTGGGAATCATATTGCTGTTGCTCTCTTGGATGGCGCAGTCAAGGTC TTCACTATGGACTCACTGAAGTTTGCCCTTACCCTTTATGGCCACAAACTTCCAGTTCTC TGCATGGATATATCATCCGATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTG AAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGT GTGATGGATGTTAAGTTTGTTTCTAAAACACATTATATGTTCAGTGTTGGGAAAGACCGC ACTGTAAAGTACTGGGATGCTGATAAATTCGAGTTGTTGTTAACACTGGAAGGACACCAT GCTGAAGTTTGGTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCAT GACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)