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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1327 fasta sequence
[CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCCGGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGACCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTCCTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGTGGGGTGCCATTCTCTACAATGGGTATACATACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGATGGCTGTTGGCATAAGTGATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG]
[+] EMBL AK111880 [CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCCGGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGACCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTCCTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGTGGGGTGCCATTCTCTACAATGGGTATACATACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGATGGCTGTTGGCATAAGTGATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG]
[-] EMBL CF315714 [ TTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTAaaaa ]
consensusID : consensus_8130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[TTGAAGTATTGACAATTTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTGATAAGAGGGAACAAGCGGGAGCATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCCTTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGTTTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAGACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTTGCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGAATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTATCCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTTTTTGCTTTCATTTAGTATTTGAGCTGTTATCAAATGATCCAAAACAAACTCCACTCAACAAAATAAGTACTACC]
[+] EMBL CF308832 [TTGAAGTATTGACAATTTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTGATAAGAGGGAACAAGCGGGAGCATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCCTTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGTTTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAGACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTTGCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGAATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTATCCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTTTTTGCTTTCATTTAGTATTTGAGCTGTTATCAAATGATCCAAAACAAACTCCACTCAACAAAATAAGTACTACC]
consensusID : consensus_8130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[CATGGACGAAGGAGTAGAAACGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTGAATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCG-TTAATCGGGTGGGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGC-ACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATATTTTGGCTCTCTTTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAA]
[+] EMBL CF315713 [CATGGACGAAGGAGTAGAAACGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTGAATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCG TTAATCGGGTGGGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGC ACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATATTTTGGCTCTCTTTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAA]
[+] EMBL CF323980 [ gTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTG TGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTG ATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGNGT GGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8130#0 CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCC 60
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 GGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGA 120
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 --------------------------------------------TTGAAGTATTGACAAT 16
consensus_8130#0 CCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTC 180
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 TTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTG-ATAAGAGGGAACAAGCGGGAG 75
consensus_8130#0 CTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGT 240
consensus_8130#2 -------------------------------------CATGGACGAAGGAGTAGAAACGT 23
consensus_8130#1 CATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCC 135
consensus_8130#0 CTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCA-- 298
consensus_8130#2 CTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCA-- 81
consensus_8130#1 TTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGT 195
* * * * * ** * ***** ** ** * * * **** * ***
consensus_8130#0 -TCAAATGCATTCTACTGT----TTTGCTCATGACTACAGTGCACACT---TCTTCTGTG 350
consensus_8130#2 -TCAAATGCATTCTACTGT----TTTGCTCATGACTACAGTGCACACT---TCTTCTGTG 133
consensus_8130#1 TTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAG 255
** ******* * * * * **** *** ** * ** * * * *
consensus_8130#0 TGGCTTCTTTTCTATGGACAACCACTATAGCGT-TCACTCTTCATCGCACCGTTGTCAA- 408
consensus_8130#2 TGGCTTCTTTTCTATGGACAACCACTATAGCGT-TCACTCTTCATCGCACCGTTGTCAA- 191
consensus_8130#1 ACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTT 315
** ** ** * ** * * ** * ***** * * *
consensus_8130#0 ACATAAAACGGATGTTGAGGAGTTTGGAT--CAATTTTCCACCTGTATGTGTG--GGGAA 464
consensus_8130#2 ACATAAAACGGATGTTGAGGAGTTTGGAT--CAATTTTCCACCTGTATGTGTG--GGGAA 247
consensus_8130#1 GCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAA 375
* * ** * ** ** ** ******** * ***** * ****
consensus_8130#0 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 524
consensus_8130#2 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 307
consensus_8130#1 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 435
************************************************************
consensus_8130#0 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGG--TCTTGCACTTGGTAACCTTTTATCT 582
consensus_8130#2 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGG--TCTTGCACTTGGTAACCTTTTATCT 365
consensus_8130#1 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGA 495
********************************* * * * ** ** * * **
consensus_8130#0 TCCA-TTGT-GGGGTGCCATTCTCTACAATGGGTATACAT-ACTTTCAGGTTAATCG--- 636
consensus_8130#2 TCCA-TTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCG--- 421
consensus_8130#1 ATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTAT 555
** ** *** * * ** *** * *** ** * ** *
consensus_8130#0 -CATGATAAACAACGCGACAAGGAT-GG--CTGTTGGCATAAGTGA-TCGATCAATTCAA 691
consensus_8130#2 -CATGATAAACAACGCGACAAGGANTGG--CTGTTGGCATAAGTGAATCGATCAATTCAA 478
consensus_8130#1 CCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTT---TTTGC 612
**** ** ** * * * * ** ** ** * * * * * * **
consensus_8130#0 TCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGG--TTATTACCCTCTCATTC 749
consensus_8130#2 TCTGACGTGAGGGCAGACAAGAAGGCGTTAATCGGGTGGGGGGTTATTACCCTCTCATTC 538
consensus_8130#1 TTTCATTTA---GTATTTGAGCTGTTATCAAATGATCCAAA--ACAAACTCCACTCAACA 667
* * * * * * ** * * * * ** ****
consensus_8130#0 TAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCC 809
consensus_8130#2 TAATAGGTTCATGGGCTTTCGCA-CAATCAATCGTGTGCATGACTTTGCTAATCCAGGCC 597
consensus_8130#1 AAATAAGTACTACC---------------------------------------------- 681
**** ** *
consensus_8130#0 ACAAGATATTTTGGCTCTCTATTCTTGATGTTGGG-TTTGCCGGACTTATGGGGCTTTTT 868
consensus_8130#2 -CAAGATATTTTGGCTCTCT-TTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTT 655
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 AATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGAC 928
consensus_8130#2 AATTCCATCGCTTATGGGCTCAA------------------------------------- 678
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 ATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAG 988
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 CAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAG 1048
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 CACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTAC 1108
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 TGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGT 1168
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 CCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGT 1228
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 ACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCC 1288
consensus_8130#2 ------------------------------------------------------------
consensus_8130#1 ------------------------------------------------------------
consensus_8130#0 CTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG 1327
consensus_8130#2 ---------------------------------------
consensus_8130#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||