These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1327 fasta sequence [CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCCGGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGACCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTCCTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGTGGGGTGCCATTCTCTACAATGGGTATACATACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGATGGCTGTTGGCATAAGTGATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG] [+] EMBL AK111880 [CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCCGGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGACCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTCCTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGTGGGGTGCCATTCTCTACAATGGGTATACATACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGATGGCTGTTGGCATAAGTGATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG] [-] EMBL CF315714 [ TTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTCTTGATGTTGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTAaaaa ] consensusID : consensus_8130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [TTGAAGTATTGACAATTTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTGATAAGAGGGAACAAGCGGGAGCATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCCTTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGTTTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAGACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTTGCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGAATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTATCCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTTTTTGCTTTCATTTAGTATTTGAGCTGTTATCAAATGATCCAAAACAAACTCCACTCAACAAAATAAGTACTACC] [+] EMBL CF308832 [TTGAAGTATTGACAATTTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTGATAAGAGGGAACAAGCGGGAGCATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCCTTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGTTTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAGACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTTGCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGAATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTATCCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTTTTTGCTTTCATTTAGTATTTGAGCTGTTATCAAATGATCCAAAACAAACTCCACTCAACAAAATAAGTACTACC] consensusID : consensus_8130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [CATGGACGAAGGAGTAGAAACGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTGAATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCG-TTAATCGGGTGGGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGC-ACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATATTTTGGCTCTCTTTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAA] [+] EMBL CF315713 [CATGGACGAAGGAGTAGAAACGTCTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCATCAAATGCATTCTACTGTTTTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTGAATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCG TTAATCGGGTGGGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGC ACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATATTTTGGCTCTCTTTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAA] [+] EMBL CF323980 [ gTGCTCATGACTACAGTGCACACTTCTTCTGTGTGGCTTCTTTTCTATGGACAACCACTATAGCGTTCACTCTTCATCGCACCGTTGTCAAACATAAAACGGATGTTGAGGAGTTTGGATCAATTTTCCACCTGTATGTGTGGGGAACTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCTGGTGTTGGATCCAACAAGGAAGCATGGGAAAGGTCTTGCACTTGGTAACCTTTTATCTTCCATTG TGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCGCATGATAAACAACGCGACAAGGANTGGCTGTTGGCATAAGTG ATCGATCAATTCAATCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGNGT GGGGGTTATTACCCTCTCATTCTAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCCAAGATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8130#0 CACTGCGCCATTCCTTCCTTCCCCCCACCTCCTCGTCGACGCGGAGATCGCTCGCTCGCC 60 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 GGCGACGGCGATGGCGGCATCGGCGGCGGCTGCGGCGGCGGTGAGCCAGGCGCTGAGGGA 120 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 --------------------------------------------TTGAAGTATTGACAAT 16 consensus_8130#0 CCGCGACGTCCTCGACGCCGTCGGCACCTCCGCCGCCGCGCTTTCGCTCGCGGGCTCTTC 180 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 TTTATAGCTGTTTCATCTATTTGAAGTGTATGTGATTG-ATAAGAGGGAACAAGCGGGAG 75 consensus_8130#0 CTTCATCGTGCTCTGCTACCTCCTCTTCCGCGAGCTCCGCAAGTTCTCCTTCAAGCTCGT 240 consensus_8130#2 -------------------------------------CATGGACGAAGGAGTAGAAACGT 23 consensus_8130#1 CATTTTGATTTCTTATATCTAAGCATTATGTAGATTTGATGCACATACTTTTGTTTCTCC 135 consensus_8130#0 CTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCA-- 298 consensus_8130#2 CTACTTCCTCGCGGTCTCGGATATGTTTTGCAGCTTATTCACTATTATGGGGGGCCCA-- 81 consensus_8130#1 TTTTCTGTTATTGTTGTCTGCATTGTTTGTCATCTAAGAACCAAGTATGCAAGTTCCAGT 195 * * * * * ** * ***** ** ** * * * **** * *** consensus_8130#0 -TCAAATGCATTCTACTGT----TTTGCTCATGACTACAGTGCACACT---TCTTCTGTG 350 consensus_8130#2 -TCAAATGCATTCTACTGT----TTTGCTCATGACTACAGTGCACACT---TCTTCTGTG 133 consensus_8130#1 TTCTCATGCATTTTTCATTCCTGTCTGCTAATGTATATACTGAATGGTAGACAACTTAAG 255 ** ******* * * * * **** *** ** * ** * * * * consensus_8130#0 TGGCTTCTTTTCTATGGACAACCACTATAGCGT-TCACTCTTCATCGCACCGTTGTCAA- 408 consensus_8130#2 TGGCTTCTTTTCTATGGACAACCACTATAGCGT-TCACTCTTCATCGCACCGTTGTCAA- 191 consensus_8130#1 ACATTTGTTGACTTGACATAATTGCGAACATGTGTTGTAACTCATCCTATTAATCTTGTT 315 ** ** ** * ** * * ** * ***** * * * consensus_8130#0 ACATAAAACGGATGTTGAGGAGTTTGGAT--CAATTTTCCACCTGTATGTGTG--GGGAA 464 consensus_8130#2 ACATAAAACGGATGTTGAGGAGTTTGGAT--CAATTTTCCACCTGTATGTGTG--GGGAA 247 consensus_8130#1 GCCCTGCTTGAATTTACAGTTCTTGTGACAATAATTTTCCTTTTATATGTTTCTCAGGAA 375 * * ** * ** ** ** ******** * ***** * **** consensus_8130#0 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 524 consensus_8130#2 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 307 consensus_8130#1 CTTCACTAGCTACAACTGTATTACGTTCAATTGGAAGTGATTATGGAAGGCCAGGCACCT 435 ************************************************************ consensus_8130#0 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGG--TCTTGCACTTGGTAACCTTTTATCT 582 consensus_8130#2 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGG--TCTTGCACTTGGTAACCTTTTATCT 365 consensus_8130#1 GGTGTTGGATCCAACAAGGAAGCATGGGAAAGGCATGTGACCTTTTGTGTTTTGTCATGA 495 ********************************* * * * ** ** * * ** consensus_8130#0 TCCA-TTGT-GGGGTGCCATTCTCTACAATGGGTATACAT-ACTTTCAGGTTAATCG--- 636 consensus_8130#2 TCCA-TTGNTGGGGTGCCATTCTCTACAATGGGTATACANTACTTTCAGGTTAATCG--- 421 consensus_8130#1 ATCAGTTAACTTGGTTCTAACACTGCTAACACCTATCTACAGCTTACATTTGAACCTTAT 555 ** ** *** * * ** *** * *** ** * ** * consensus_8130#0 -CATGATAAACAACGCGACAAGGAT-GG--CTGTTGGCATAAGTGA-TCGATCAATTCAA 691 consensus_8130#2 -CATGATAAACAACGCGACAAGGANTGG--CTGTTGGCATAAGTGAATCGATCAATTCAA 478 consensus_8130#1 CCATGGTAGTCAGAGTGGCCCANATTGGTGCTAATGACGTTCCTATATGGTT---TTTGC 612 **** ** ** * * * * ** ** ** * * * * * * ** consensus_8130#0 TCTGACGTGAGGGCAGACAAGAAGGCGTTTAATCGGTGGGG--TTATTACCCTCTCATTC 749 consensus_8130#2 TCTGACGTGAGGGCAGACAAGAAGGCGTTAATCGGGTGGGGGGTTATTACCCTCTCATTC 538 consensus_8130#1 TTTCATTTA---GTATTTGAGCTGTTATCAAATGATCCAAA--ACAAACTCCACTCAACA 667 * * * * * * ** * * * * ** **** consensus_8130#0 TAATAGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCC 809 consensus_8130#2 TAATAGGTTCATGGGCTTTCGCA-CAATCAATCGTGTGCATGACTTTGCTAATCCAGGCC 597 consensus_8130#1 AAATAAGTACTACC---------------------------------------------- 681 **** ** * consensus_8130#0 ACAAGATATTTTGGCTCTCTATTCTTGATGTTGGG-TTTGCCGGACTTATGGGGCTTTTT 868 consensus_8130#2 -CAAGATATTTTGGCTCTCT-TTCTTGATGTTGGGGTTTGCCGGACTTATGGGGCTTTTT 655 consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 AATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGATTGCTGAAAGACTTGAC 928 consensus_8130#2 AATTCCATCGCTTATGGGCTCAA------------------------------------- 678 consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 ATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAG 988 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 CAAGAAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAG 1048 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 CACACTAAGTTTGTTCATATCTTGTGGGTTCTTCAATCCAGAAAGGGTGTATGACATTAC 1108 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 TGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGAATAGTTCCCCTGCGGT 1168 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 CCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGT 1228 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 ACATAAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCC 1288 consensus_8130#2 ------------------------------------------------------------ consensus_8130#1 ------------------------------------------------------------ consensus_8130#0 CTTTTTTTGTGGATGTATCAGTGTACCACCCTCTCCATG 1327 consensus_8130#2 --------------------------------------- consensus_8130#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||