These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1490 fasta sequence [TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT] [+] EMBL AK064109 [TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAA ] [-] EMBL CB643898 [ TCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT] [-] EMBL CB643937 [ ACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAG ] [-] EMBL CB643897 [ TGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCTTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTATACAAGGTTTTAGAAAATCAATGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTCGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTTCAGTTGAATGGGACACACATTA ] consensusID : consensus_8146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA] [-] EMBL CF277209 [TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8146#0 TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACC 60 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCC 120 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 TCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACG 180 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCG 240 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGAT 300 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTG 360 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 ATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCG 420 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 TCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCA 480 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 AGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATG 540 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTAC 600 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTAT 660 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGT 720 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGC 780 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTA 840 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 GTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCA 900 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTC 960 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTA 1020 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 ATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTG 1080 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 AATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAAT 1140 consensus_8146#1 ------------------------------------------------------------ consensus_8146#0 CCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGG 1200 consensus_8146#1 -----------------TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGG 43 ************* ** ** *********************** consensus_8146#0 CTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAAT 1260 consensus_8146#1 CTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAAT 103 ***** **************** ********** * ************************ consensus_8146#0 ATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGAC 1320 consensus_8146#1 ATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGAC 163 ******************* ************ ********************** **** consensus_8146#0 ATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTAT 1380 consensus_8146#1 ATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTAT 223 ******** ** **************************************** ******* consensus_8146#0 GGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTC 1440 consensus_8146#1 GGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTT 283 **** * ***** ************************ * * ************* *** consensus_8146#0 TTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT---------- 1490 consensus_8146#1 TTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCA 343 ** *** ***************************** ************ consensus_8146#0 --------- consensus_8146#1 GTTTGATGA 352 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||