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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1490 fasta sequence
[TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT]
[+] EMBL AK064109 [TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAA ]
[-] EMBL CB643898 [ TCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT]
[-] EMBL CB643937 [ ACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAG ]
[-] EMBL CB643897 [ TGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCTTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTATACAAGGTTTTAGAAAATCAATGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTCGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTTCAGTTGAATGGGACACACATTA ]
consensusID : consensus_8146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA]
[-] EMBL CF277209 [TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8146#0 TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACC 60
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCC 120
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 TCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACG 180
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCG 240
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGAT 300
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTG 360
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 ATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCG 420
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 TCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCA 480
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 AGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATG 540
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTAC 600
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTAT 660
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGT 720
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGC 780
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTA 840
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 GTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCA 900
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTC 960
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTA 1020
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 ATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTG 1080
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 AATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAAT 1140
consensus_8146#1 ------------------------------------------------------------
consensus_8146#0 CCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGG 1200
consensus_8146#1 -----------------TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGG 43
************* ** ** ***********************
consensus_8146#0 CTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAAT 1260
consensus_8146#1 CTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAAT 103
***** **************** ********** * ************************
consensus_8146#0 ATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGAC 1320
consensus_8146#1 ATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGAC 163
******************* ************ ********************** ****
consensus_8146#0 ATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTAT 1380
consensus_8146#1 ATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTAT 223
******** ** **************************************** *******
consensus_8146#0 GGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTC 1440
consensus_8146#1 GGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTT 283
**** * ***** ************************ * * ************* ***
consensus_8146#0 TTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT---------- 1490
consensus_8146#1 TTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCA 343
** *** ***************************** ************
consensus_8146#0 ---------
consensus_8146#1 GTTTGATGA 352
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||