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Oryza sativa
cluster # 8146 cluster # 8146       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8146#0 length = 1490 sequences # 4  
consensus_8146#1 length = 352 sequences # 1  

consensusID : consensus_8146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1490
fasta sequence
                              [TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT]

[+] EMBL AK064109             [TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACCGCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCCTCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACGGCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCGCTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGATCTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCAAGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTATCCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAA                          ]
[-] EMBL CB643898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTACTGTTAAGTGTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT]
[-] EMBL CB643937             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACGTGGAAGACATTTCTGGGAGAAGGTATATGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTCTTGAG                                             ]
[-] EMBL CB643897             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCGGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCTTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATACGAAACAGCTTGAAATTATACAAGGTTTTAGAAAATCAATGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTCGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTTCAGTTGAATGGGACACACATTA                                                                 ]


>consensus_8146#0 TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACC GCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCC TCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACG GCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCG CTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGAT CTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTG ATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCG TCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCA AGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATG GCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTAC CCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTAT CCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGT GTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGC GGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTA GTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCA CCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTC CAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTA ATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTG AATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAAT CCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGG CTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAAT ATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGAC ATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTAT GGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTC TTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT



consensusID : consensus_8146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA]

[-] EMBL CF277209             [TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA]


>consensus_8146#1 TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGGCTGAAACGGTGGGCGAC TGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAATATCCGTGCAACCCAACA TGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGACATGTGGTTTTTTGCCGT TGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTATGGGGGTTTCAGAAACAG TATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTTTTTAGGGCCGTTCAAAC ATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCAGTTTGATGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8146#0      TCCAACAACAACAACTAGTCTCAGTCATGCCGCCTCTCTTCTCCGCGCCGGCGCTCCACC 60
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GCCGCCGCCTTCTCCGCCACGCCGCCGCATTCGCCCTTGTGCTCCTCGCCGTCGCCCTCC 120
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      TCTTCCTCCTCCTCGTACACCCCCGCTCGCTCGGCACCCCTTCCCCTTCCCCGTCCTACG 180
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GCCACCGCCTCCCCACGCTCGTCGACCTCACCCTAGTCCACGGCGCCAAGGAGAAGGGCG 240
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CTGTCTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTGCCAGGCTTCGGCGACGGAT 300
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CTAACAAATGGCTCCTCCACCTAGAGGGCGGGAGCTGGTGCAGGAATCGCACGTCCTGTG 360
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      ATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCG 420
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      TCGGCATCCTGAGCGACGACAAGGCCCAGAACCCAGATTTTTACAACTGGAACAAGGTCA 480
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      AGATCAGGTATTGTGATGGTGCCTCCTTATCTGGAAATGTCCAAGATGAACACCAGTATG 540
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGGCTGAACTTCTAC 600
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CCAAGGGTCTAGCCCGTGCTAAACAGGCTTTTCTTACAGGATGCTCTGCAGGTGGTCTAT 660
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CCACATACATTCACTGTGATGATTTCCGTGCACTTTTACCAAAGGATTCTACTGTTAAGT 720
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GTCTTGCAGATGGTGGTTTTTTTCTTGACGTGGAAGACATTTCTGGGAGAAGGTATATGC 780
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GGGGCTTCTATAATGATGTTGCTCGTCAACAGGATTTGCGGAAACGGTTCCCTGGTTGTA 840
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCA 900
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGGTAGAGCATGTCTTGACTC 960
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTA 1020
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      ATACGAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTG 1080
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      AATTCAAGAAGAAAAGGGGCTGGGGCATGTTCATTGATTCATGCTTTATACATTGCCAAT 1140
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      CCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATAAACAATAAGACTGTGG 1200
consensus_8146#1      -----------------TGGCACTCCCCATTTGGTTTGAGAATAAACAATAAGACTGTGG 43
                                       ************* ** ** ***********************

consensus_8146#0      CTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAAT 1260
consensus_8146#1      CTGAAACGGTGGGCGACTGGTTTTTTGATCGGAAAAAGGTGAAGGAAATAGACTGTGAAT 103
                      ***** **************** ********** * ************************

consensus_8146#0      ATCCGTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGAC 1320
consensus_8146#1      ATCCGTGCAACCCAACATGGTTCAATGTTGTTTTTGAACAACCCTATCAGGAAGGGTGAC 163
                      ******************* ************ ********************** ****

consensus_8146#0      ATGTGGTTCTTCGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCACCCCTAT 1380
consensus_8146#1      ATGTGGTTTTTTGCCGTTGTAGTTTACCGATGATTTGAAGCAGAATATACCCCCCCCTAT 223
                      ******** ** **************************************** *******

consensus_8146#0      GGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACTAGTAGTAGTGCACCTC 1440
consensus_8146#1      GGGGGTTTCAGAAACAGTATGTCCAGTTGAATGGGACCCCCCCTAGTAGTAGTGCCCCTT 283
                      **** * ***** ************************ * * ************* *** 

consensus_8146#0      TTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGAT---------- 1490
consensus_8146#1      TTTAGGGCCGTTCAAACATAGAAATATTGACAAGATTTTGCCGTGTTGAAGCCTTTATCA 343
                      ** *** ***************************** ************           

consensus_8146#0      ---------
consensus_8146#1      GTTTGATGA 352
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)