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Oryza sativa
cluster # 8149 cluster # 8149       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8149#0 length = 2635 sequences # 3  
consensus_8149#1 length = 777 sequences # 1  
consensus_8149#2 length = 369 sequences # 1  

consensusID : consensus_8149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2635
fasta sequence
                              [TTCCATTTTTTATGTGTTTTGTTAGGAACGAGAGAGAAAGAGGGAGAGAAGTAACTTAATCAAACTCTCAATGTGAAATCTCTCTGTTGTAAATCCAAGTTCAGTTTTTCTTACTATTTGTCACACTTGTTCCTACCTGAAATGGGTGGAACCCATAATGTTTTCTCGAAAGGGAAAAACAGATTAATACTAGATTCTTTGTTCTTGCTTTTGGAATGTGCCTTCACACCAAGCTGAAATTTGCGTACTCATGCCTCCTCCCCAAGATATTTGGAAGAAACTCTGTCAAAATTGGTCTCAATTTGATCCACTCATTCAAGAAGGCATCTTATGTGCTTATGGGCTGCCTTTGCTCCAAAGGCGCAAAAGATGATACCGATGCCACTTCTGAGAACAAAACACCATCGAGGAATTCTGCTGCAGCAAGTGCTAAGACAGCAACCGGTACAAATGATGGCAACTCAGCTGTGATTGATGGACAGCTGAAAGAAAATGCAAGTAAATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTCTAGATGTTAGGACCGGTAGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGGTGCCTCGGCGAGCCGATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTATTGTATACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGCTTTATGGCTAGAGAAATCAAAATCCTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTGGCCTCAAGCTCTCTGAGCCACAGGTGGTTGTTATGCTTCTCTTACATGGATTTTTTAGAAAATTCATCTTACATTGATATCGTTTAAGAAAATTGGATGAACTAAAATGATTAAACATGAATATCAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCTGAAAGTTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGAAAACCAATCATGCCAGGAAGAACTGAGGTGGAGCAAATTCACAAGATTTTTAAGCTCTGTGGGTCACCCATGGATGATTATTGCAAGAAATCAAAAGTGCCAGAGACAGCAATGTTCAAGCCTCAGCATCAGTATAGGCGGTGTGTTGCTGAGACTTTCAAAGTTTTTCCTACTTCAGCTGTTGTTCTCATAGACTCCTTGCTTTCATTAGACCCAGGAGCTCGAGGAACAGCTGCCTCAGCTCTTCAAAGTGATTTTTTCACAAAAGAGCCATTTGCATGCGACCCATCAAGCCTGCCAAAACTTCCACCAAGCAAGGAGTATGATGTTAGACTGAGGCAAGAGGAAGCCAGGAGGCAAAAAACCGCAGCTCTTGCCGGACAAGGAGCTGAATCTGTCAGGCCAGAAAATGACAATCGTGTAACGAATCGTACTATTAGTGGTGTTAATGGTGAATTGAAGCAACAAACACACACCAGCTCAAAGAGCAACAGCGAGGTGTTCAACCAAGAGGACAGTGTTCCAGGGTTTAGGGTGGAACCACGGGAACGTCCAACTGCGGTGCAGCTCCCTGGGTACAGTTCCACATGGAACAACATGGAGGGCGACAATGACCAGCCAACAGTACCTGGCCGCGCTTGCTGCTCAGTGCGCGTCGCGAATCCTTGTGGCATAAGGAAGAAGGGGTCATCACACTCGCTCATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATGAGAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCAGGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGGCAGGTAGCTTAAGTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTTGCAACCTCCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTTAGCTTGTAACAATGTGTTATCAGGTAGGATATAATCACCATGTAAGATTGAAGAACATGACTGGATTTATAGAAATTTTCCCCTCATAGCAGTACCTGAAATTAAGAGTTTTTGTGAGGTTTTCAACAGTTGGATTGTGATTTTTTCCTTATTTAATTTGGAGCCCTGCTCTCCTAGAGCAT]

[+] EMBL AK100360             [TTCCATTTTTTATGTGTTTTGTTAGGAACGAGAGAGAAAGAGGGAGAGAAGTAACTTAATCAAACTCTCAATGTGAAATCTCTCTGTTGTAAATCCAAGTTCAGTTTTTCTTACTATTTGTCACACTTGTTCCTACCTGAAATGGGTGGAACCCATAATGTTTTCTCGAAAGGGAAAAACAGATTAATACTAGATTCTTTGTTCTTGCTTTTGGAATGTGCCTTCACACCAAGCTGAAATTTGCGTACTCATGCCTCCTCCCCAAGATATTTGGAAGAAACTCTGTCAAAATTGGTCTCAATTTGATCCACTCATTCAAGAAGGCATCTTATGTGCTTATGGGCTGCCTTTGCTCCAAAGGCGCAAAAGATGATACCGATGCCACTTCTGAGAACAAAACACCATCGAGGAATTCTGCTGCAGCAAGTGCTAAGACAGCAACCGGTACAAATGATGGCAACTCAGCTGTGATTGATGGACAGCTGAAAGAAAATGCAAGTAAATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTCTAGATGTTAGGACCGGTAGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGGTGCCTCGGCGAGCCGATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTATTGTATACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGCTTTATGGCTAGAGAAATCAAAATCCTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTGGCCTCAAGCTCTCTGAGCCACAGGTGGTTGTTATGCTTCTCTTACATGGATTTTTTAGAAAATTCATCTTACATTGATATCGTTTAAGAAAATTGGATGAACTAAAATGATTAAACATGAATATCAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCTGAAAGTTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGAAAACCAATCATGCCAGGAAGAACTGAGGTGGAGCAAATTCACAAGATTTTTAAGCTCTGTGGGTCACCCATGGATGATTATTGCAAGAAATCAAAAGTGCCAGAGACAGCAATGTTCAAGCCTCAGCATCAGTATAGGCGGTGTGTTGCTGAGACTTTCAAAGTTTTTCCTACTTCAGCTGTTGTTCTCATAGACTCCTTGCTTTCATTAGACCCAGGAGCTCGAGGAACAGCTGCCTCAGCTCTTCAAAGTGATTTTTTCACAAAAGAGCCATTTGCATGCGACCCATCAAGCCTGCCAAAACTTCCACCAAGCAAGGAGTATGATGTTAGACTGAGGCAAGAGGAAGCCAGGAGGCAAAAAACCGCAGCTCTTGCCGGACAAGGAGCTGAATCTGTCAGGCCAGAAAATGACAATCGTGTAACGAATCGTACTATTAGTGGTGTTAATGGTGAATTGAAGCAACAAACACACACCAGCTCAAAGAGCAACAGCGAGGTGTTCAACCAAGAGGACAGTGTTCCAGGGTTTAGGGTGGAACCACGGGAACGTCCAACTGCGGTGCAGCTCCCTGGGTACAGTTCCACATGGAACAACATGGAGGGCGACAATGACCAGCCAACAGTACCTGGCCGCGCTTGCTGCTCAGTGCGCGTCGCGAATCCTTGTGGCATAAGGAAGAAGGGGTCATCACACTCGCTCATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATGAGAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCAGGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGGCAGGTAGCTTAAGTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTTGCAACCTCCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTTAGCTTGTAACAATGTGTTATCAGGTAGGATATAATCACCATGTAAGATTGAAGAACATGACTGGATTTATAGAAATTTTCCCCTCATAGCAGTACCTGAAATTAAGAGTTTTTGTGAGGTTTTCAACAGTTGGATTGTGATTTTTTCCTTATTTAATTTGGAGCCCTGCTCTC         ]
[-] EMBL CB621820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TACTATTAGTGGCGTTAATGGTGAATTGAAGCAACAAACACACACCAGCTCAAAGAGCAACAGCGAGGCGTTCAACCAAGAGGACAGTGTTCCAGGGTTTAGGGTGGAATCACGGGAACGTCCAACTGCGGTGCAGCTCCCTGGGTACAGTTCCACATGGAACAACATGGAGGGCGACAACGACCAGCGAACAGTACCTGGTCGCGGTTGCTGCTCAGTGCGCGTCGCGAATCCTTGTGGCATAAGGAAGAAGGGGTCATCACACTCGCTCATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATGAGAACAAGAACCCAGAAGTCAAGGACGCCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCAGGACCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGACAGGTAGCTTAAGTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTTGCAACCTCCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTTAGCTTGTAACAATGTGTTATCAGATAGGATATGATCACCGTGTAAGATTGAAGAGCATG CTGGATTTATAGAAATTTTCCCTTCATAGCAGTACCTGAATTTAAGAGTTTTTGTGAGGTTTTCATCAGTTGGATTGTGAATTTTTCCTTATTTAACCTGGAGCCCTGGGCTCCTAGAGCAT]
[+] EMBL CF318115             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tGCTCATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATGAGAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCAGGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGGCAGGTAGCTTAAGTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTTGCAACCTCCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTTAGCTTGTAACAATGTGTTATCAGGTAGGATATAATCACCATGTAAGATTGAAGAACATGACTGGATTTATAGAAATTTTCCCCTCATAGCAGTACCTGA                                                                                   ]


>consensus_8149#0 TTCCATTTTTTATGTGTTTTGTTAGGAACGAGAGAGAAAGAGGGAGAGAAGTAACTTAAT CAAACTCTCAATGTGAAATCTCTCTGTTGTAAATCCAAGTTCAGTTTTTCTTACTATTTG TCACACTTGTTCCTACCTGAAATGGGTGGAACCCATAATGTTTTCTCGAAAGGGAAAAAC AGATTAATACTAGATTCTTTGTTCTTGCTTTTGGAATGTGCCTTCACACCAAGCTGAAAT TTGCGTACTCATGCCTCCTCCCCAAGATATTTGGAAGAAACTCTGTCAAAATTGGTCTCA ATTTGATCCACTCATTCAAGAAGGCATCTTATGTGCTTATGGGCTGCCTTTGCTCCAAAG GCGCAAAAGATGATACCGATGCCACTTCTGAGAACAAAACACCATCGAGGAATTCTGCTG CAGCAAGTGCTAAGACAGCAACCGGTACAAATGATGGCAACTCAGCTGTGATTGATGGAC AGCTGAAAGAAAATGCAAGTAAATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTC TAGATGTTAGGACCGGTAGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATG TAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGG TGCCTCGGCGAGCCGATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTA TTGTATACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGT TTGTCAACATGGACCCTGAGAGCGTGCGCTTTATGGCTAGAGAAATCAAAATCCTTAGGA CACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAA GCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTG GCCTCAAGCTCTCTGAGCCACAGGTGGTTGTTATGCTTCTCTTACATGGATTTTTTAGAA AATTCATCTTACATTGATATCGTTTAAGAAAATTGGATGAACTAAAATGATTAAACATGA ATATCAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAA TGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCT GAAAGTTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGAC AAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATA TGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGAAA ACCAATCATGCCAGGAAGAACTGAGGTGGAGCAAATTCACAAGATTTTTAAGCTCTGTGG GTCACCCATGGATGATTATTGCAAGAAATCAAAAGTGCCAGAGACAGCAATGTTCAAGCC TCAGCATCAGTATAGGCGGTGTGTTGCTGAGACTTTCAAAGTTTTTCCTACTTCAGCTGT TGTTCTCATAGACTCCTTGCTTTCATTAGACCCAGGAGCTCGAGGAACAGCTGCCTCAGC TCTTCAAAGTGATTTTTTCACAAAAGAGCCATTTGCATGCGACCCATCAAGCCTGCCAAA ACTTCCACCAAGCAAGGAGTATGATGTTAGACTGAGGCAAGAGGAAGCCAGGAGGCAAAA AACCGCAGCTCTTGCCGGACAAGGAGCTGAATCTGTCAGGCCAGAAAATGACAATCGTGT AACGAATCGTACTATTAGTGGTGTTAATGGTGAATTGAAGCAACAAACACACACCAGCTC AAAGAGCAACAGCGAGGTGTTCAACCAAGAGGACAGTGTTCCAGGGTTTAGGGTGGAACC ACGGGAACGTCCAACTGCGGTGCAGCTCCCTGGGTACAGTTCCACATGGAACAACATGGA GGGCGACAATGACCAGCCAACAGTACCTGGCCGCGCTTGCTGCTCAGTGCGCGTCGCGAA TCCTTGTGGCATAAGGAAGAAGGGGTCATCACACTCGCTCATACCACAGTTTGGTGCGAC CGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATGA GAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAAGGATCCA CCACTCAGGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGA GAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGGCAGGTAGCTTAA GTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTTGCAACCT CCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTTAGCTTGT AACAATGTGTTATCAGGTAGGATATAATCACCATGTAAGATTGAAGAACATGACTGGATT TATAGAAATTTTCCCCTCATAGCAGTACCTGAAATTAAGAGTTTTTGTGAGGTTTTCAAC AGTTGGATTGTGATTTTTTCCTTATTTAATTTGGAGCCCTGCTCTCCTAGAGCAT



consensusID : consensus_8149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence
                              [AGTACATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTCTAGATGTTAGGACCGGTAGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGGTGCCTCGGCGAGCCGATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTATTGTATACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGTTTTATGGCTAGAGAAATCAAAATCCTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTGGCCTCAAGCCCTCTGAGCCACAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCTGAAAATTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGA]

[+] EMBL CB621819             [AGTACATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTCTAGATGTTAGGACCGGTAGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGGTGCCTCGGCGAGCCGATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTATTGTATACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGTTTTATGGCTAGAGAAATCAAAATCCTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTGGCCTCAAGCCCTCTGAGCCACAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCTGAAAATTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGA]


>consensus_8149#1 AGTACATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTCTAGATGTTAGGACCGGT AGTGGTAACAATGCAGAACTGAAGGGGCTCTCAGGTGAGCATGTAGCTGCTGGGTGGCCT GCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTGGGTGCCTCGGCGAGCCGAT TCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTATAGTATTGTATACAAAGCTCGG GATCTTGAAACAGGAAACATTGTTGCACTAAAAAAGGTGCGGTTTGTCAACATGGACCCT GAGAGCGTGCGTTTTATGGCTAGAGAAATCAAAATCCTTAGGACACTGGATCATCCAAAT GTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTATCGCAAAGCCTGTATCTTGTCTTC GAATACATGGAACATGACCTTTCTGGTCTCATTGCAACTCCTGGCCTCAAGCCCTCTGAG CCACAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCCACAAAAAT GGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATGGAGTGCTG AAAATTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAACCGCTGACA AGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAACAGAATAT GGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTGCTGGA



consensusID : consensus_8149#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence
                              [CCCCAGGGCCATTTATGCTGCCGGCAGGGAGGGTTGAGGACATGCTCCAGGAGCACGATAGGCAGATCCTAGAAACCGTTCGTAGGGGGGGGGTTAGCAAGCCAGCCAGGAAGTTTAATTAGTTGGAAGGTGCCTCGGAATTTTTAGAAGATGGACCACAGTTCTTAGGTGGCATCCTCCTATTTTTTTTTGCAATTTCAGGAGGGTGCAAAAGCCCACCAGTAGGGTTTTAGTTGGTAACAATGTGTTATCAGGTAGGAAAAAATCACCATGTAAGATTGAAGAACAACCCTGGATTTATAAAAATTTTCCCCCCATAACAGAACGTGAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318114             [CCCCAGGGCCATTTATGCTGCCGGCAGGGAGGGTTGAGGACATGCTCCAGGAGCACGATAGGCAGATCCTAGAAACCGTTCGTAGGGGGGGGGTTAGCAAGCCAGCCAGGAAGTTTAATTAGTTGGAAGGTGCCTCGGAATTTTTAGAAGATGGACCACAGTTCTTAGGTGGCATCCTCCTATTTTTTTTTGCAATTTCAGGAGGGTGCAAAAGCCCACCAGTAGGGTTTTAGTTGGTAACAATGTGTTATCAGGTAGGAAAAAATCACCATGTAAGATTGAAGAACAACCCTGGATTTATAAAAATTTTCCCCCCATAACAGAACGTGAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8149#2 CCCCAGGGCCATTTATGCTGCCGGCAGGGAGGGTTGAGGACATGCTCCAGGAGCACGATA GGCAGATCCTAGAAACCGTTCGTAGGGGGGGGGTTAGCAAGCCAGCCAGGAAGTTTAATT AGTTGGAAGGTGCCTCGGAATTTTTAGAAGATGGACCACAGTTCTTAGGTGGCATCCTCC TATTTTTTTTTGCAATTTCAGGAGGGTGCAAAAGCCCACCAGTAGGGTTTTAGTTGGTAA CAATGTGTTATCAGGTAGGAAAAAATCACCATGTAAGATTGAAGAACAACCCTGGATTTA TAAAAATTTTCCCCCCATAACAGAACGTGAAATAAAAAATAAAAAAAAAAAAAAAAAAAA AAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8149#0      TTCCATTTTTTATGTGTTTTGTTAGGAACGAGAGAGAAAGAGGGAGAGAAGTAACTTAAT 60
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CAAACTCTCAATGTGAAATCTCTCTGTTGTAAATCCAAGTTCAGTTTTTCTTACTATTTG 120
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TCACACTTGTTCCTACCTGAAATGGGTGGAACCCATAATGTTTTCTCGAAAGGGAAAAAC 180
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AGATTAATACTAGATTCTTTGTTCTTGCTTTTGGAATGTGCCTTCACACCAAGCTGAAAT 240
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TTGCGTACTCATGCCTCCTCCCCAAGATATTTGGAAGAAACTCTGTCAAAATTGGTCTCA 300
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      ATTTGATCCACTCATTCAAGAAGGCATCTTATGTGCTTATGGGCTGCCTTTGCTCCAAAG 360
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GCGCAAAAGATGATACCGATGCCACTTCTGAGAACAAAACACCATCGAGGAATTCTGCTG 420
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CAGCAAGTGCTAAGACAGCAACCGGTACAAATGATGGCAACTCAGCTGTGATTGATGGAC 480
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AGCTGAAAGAAAATGCAAGTAAATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTC 540
consensus_8149#1      -----------------AGTACATTGCAATTGGGTGATGGAGAGAAGGCGATCGTAGCTC 43
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TAGATGTTAGGACCGGTAGTGGTAACAAT--GCAGAACTGAAGGGGCTCTCAGGTGAGCA 598
consensus_8149#1      TAGATGTTAGGACCGGTAGTGGTAACAAT--GCAGAACTGAAGGGGCTCTCAGGTGAGCA 101
consensus_8149#2      ----CCCCAGGGCCATTTATGCTGCCGGCAGGGAGGGTTGAGGACATGCTCCAG-GAGCA 55
                              *** **  *  ** *  *     * **   *** *     ***  * *****

consensus_8149#0      TGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTG 658
consensus_8149#1      TGTAGCTGCTGGGTGGCCTGCTTGGCTCGCAAATGTGGCACCAAAAGCAGTAGAAGGCTG 161
consensus_8149#2      CG--ATAGGCAGATCCTAGAAACCGTTCGTAGGGGGGGGGTTAGCA-----AGCCAGCCA 108
                       *     *   * *          * *** *   * **    *  *     **   **  

consensus_8149#0      GGTGCCTCGGCGAGCCG--ATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTA- 715
consensus_8149#1      GGTGCCTCGGCGAGCCG--ATTCATTTGAGAAATTAGACAAGATTGGACAGGGAACTTA- 218
consensus_8149#2      GGAAGTTTAATTAGTTGGAAGGTGCCTCGGAATTTTTAGAAGATGGACCACAGTTCTTAG 168
                      **    *     **  *  *      *  *** **  * ***** *  **  *  **** 

consensus_8149#0      -TAGTATTGTA-TACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAG 773
consensus_8149#1      -TAGTATTGTA-TACAAAGCTCGGGATCTTGAAACAGGAAACATTGTTGCACTAAAAAAG 276
consensus_8149#2      GTGGCATCCTCCTATTTTTTTTTGCAATTTCAGG-AGGGTGCAAAAGCCCACCAGTAGGG 227
                       * * **  *  **      *  * *  ** *   ***   **      *** *  *  *

consensus_8149#0      GTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGCTTTATGGCTAGAGAAATCAAAATC 833
consensus_8149#1      GTGCGGTTTGTCAACATGGACCCTGAGAGCGTGCGTTTTATGGCTAGAGAAATCAAAATC 336
consensus_8149#2      TTTTAGTTGGT-AACA--------------ATGTGTTATCAGGTAGGAAAAAATCACCAT 272
                       *   *** ** ****               ** * * *  **   ** ***   *    

consensus_8149#0      CTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTA 893
consensus_8149#1      CTTAGGACACTGGATCATCCAAATGTCATAAAGCTTCAAGGGATTGTAACATCTCGCGTA 396
consensus_8149#2      GTAAGATTGAAGAACAACCCTGGATTTATAAAAATTTTCCCC-CCATAACAGAACGTGAA 331
                       * **      * *  * **     * *****  **          *****   ** * *

consensus_8149#0      TCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCA 953
consensus_8149#1      TCGCAAAGCCTGTATCTTGTCTTCGAATACATGGAACATGACCTTTCTGGTCTCATTGCA 456
consensus_8149#2      ATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 369
                          ***      *           ** * *   ** *                      

consensus_8149#0      ACTCCTGGCCTCAAGCTCTCTGAGCCACAGGTGGTTGTTATGCTTCTCTTACATGGATTT 1013
consensus_8149#1      ACTCCTGGCCTCAAGCCCTCTGAGCCACAG------------------------------ 486
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TTTAGAAAATTCATCTTACATTGATATCGTTTAAGAAAATTGGATGAACTAAAATGATTA 1073
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AACATGAATATCAGATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCC 1133
consensus_8149#1      --------------ATAAAGTGCTTCGTTCAGCAGCTGCTTCATGGCCTTGATCATTGCC 532
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      ACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATG 1193
consensus_8149#1      ACAAAAATGGAGTTCTTCATAGAGACATCAAAGGCTCAAACCTTTTGATTGATAACAATG 592
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GAGTGCTGAAAGTTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAAC 1253
consensus_8149#1      GAGTGCTGAAAATTGCCGACTTTGGACTGGCAATATCTTATGATCCCAAGAATCCACAAC 652
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAA 1313
consensus_8149#1      CGCTGACAAGCCGTGTTGTGACATTGTGGTACAGACCACCAGAACTTTTGCTCGGTGCAA 712
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTG 1373
consensus_8149#1      CAGAATATGGTGTGGCTGTTGATATGTGGAGCACAGGGTGCATTGTGGCAGAACTCTTTG 772
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CTGGAAAACCAATCATGCCAGGAAGAACTGAGGTGGAGCAAATTCACAAGATTTTTAAGC 1433
consensus_8149#1      CTGGA------------------------------------------------------- 777
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TCTGTGGGTCACCCATGGATGATTATTGCAAGAAATCAAAAGTGCCAGAGACAGCAATGT 1493
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TCAAGCCTCAGCATCAGTATAGGCGGTGTGTTGCTGAGACTTTCAAAGTTTTTCCTACTT 1553
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CAGCTGTTGTTCTCATAGACTCCTTGCTTTCATTAGACCCAGGAGCTCGAGGAACAGCTG 1613
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CCTCAGCTCTTCAAAGTGATTTTTTCACAAAAGAGCCATTTGCATGCGACCCATCAAGCC 1673
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TGCCAAAACTTCCACCAAGCAAGGAGTATGATGTTAGACTGAGGCAAGAGGAAGCCAGGA 1733
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GGCAAAAAACCGCAGCTCTTGCCGGACAAGGAGCTGAATCTGTCAGGCCAGAAAATGACA 1793
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      ATCGTGTAACGAATCGTACTATTAGTGGTGTTAATGGTGAATTGAAGCAACAAACACACA 1853
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CCAGCTCAAAGAGCAACAGCGAGGTGTTCAACCAAGAGGACAGTGTTCCAGGGTTTAGGG 1913
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TGGAACCACGGGAACGTCCAACTGCGGTGCAGCTCCCTGGGTACAGTTCCACATGGAACA 1973
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      ACATGGAGGGCGACAATGACCAGCCAACAGTACCTGGCCGCGCTTGCTGCTCAGTGCGCG 2033
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TCGCGAATCCTTGTGGCATAAGGAAGAAGGGGTCATCACACTCGCTCATACCACAGTTTG 2093
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGC 2153
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      ATGATGAGAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAA 2213
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GGATCCACCACTCAGGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGG 2273
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAGGCGCGTGTCAGCAAGCCAGGCAGGT 2333
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AGCTTAAGTAGTTGGAAGGTGCCTTGGAATTCTGAGAAGATGGACCAGAGTTCAGAGGTT 2393
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      GCAACCTCCTATCTTCTCCTGCAATTTCAGGCTGCTGCAAAAGCCCATACGTAGAGTTTT 2453
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AGCTTGTAACAATGTGTTATCAGGTAGGATATAATCACCATGTAAGATTGAAGAACATGA 2513
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      CTGGATTTATAGAAATTTTCCCCTCATAGCAGTACCTGAAATTAAGAGTTTTTGTGAGGT 2573
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      TTTCAACAGTTGGATTGTGATTTTTTCCTTATTTAATTTGGAGCCCTGCTCTCCTAGAGC 2633
consensus_8149#1      ------------------------------------------------------------
consensus_8149#2      ------------------------------------------------------------
                                                                                  

consensus_8149#0      AT 2635
consensus_8149#1      --
consensus_8149#2      --
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)