These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1784 fasta sequence [CAAACATTTACGGCTGGCTTGCAATCTTAATCTTTTGCAGTGTTCGTCATTCAGGAGGCTCCCGGCCGATCCGGTGGATCGGATCGGAGCGGGAGCACAAACTGCAAATTGCCACGGTCCTTGCACTTGATTTCCGGAGCCAGGAGGATGATTTGCTGCGGCGGCGAGGAGGAGGAGACGTACGCTCCCCGTGCAGCCAGTCGCAGTCGCAGCAGGCGCCCGACACCTGCGACGCAGTACAATGCAGGCCCTCGTAAGCCAAGAGGACCAAATGCACCCAGGAGCGGCGGCCCGCCACCGAAG-GTGCTCTCCATCGACGTGCCAGCCATCTCCATGGGCGAGCTGAACAACATCACCGGACACTTTGGACAGAGTGCCTTGATAGGAGAAGGTTCGTACGGTCGAATCTACAGGGCGGTGCTGACCTCCGGGGAGCCGGTTGCCATAAAAAAGCTTGATCCCAGCGTGTCAAGCGACTCTGAAGCAGACTTCTCTGCTCAGCTGTCAATGGTTTCGAGGCTCAAGAACGAGTATTTCATCCGGCTGATGGGCTACTACCTGGATGCAAACCGAAGAATCCTGGTCTACCAGTTTGCCACGCACGGCTCCCTGCATGACATCCTACACGGGAAGAAGGGCGTGAGGGACGCGGCGCCGGGGCCGGCGCTGAACTGGAGCCAGCGGGTGAAGGTGGCGTACGGCGCCGCGAGAGGGCTCGAGTACCTCCACGAGAAGGCCCAGCCGCCCATCGTCCACCGCGACGTGCGGTCGAGCAACGTTCTCCTCTTCGACGGCTACGAGTCCAAGCTCGCCGACTTCAACCTCACCACCCAGCCTCCCGACGGCGCCGCGCGGTTGCACTCCACCCGCGTCCTCGGAACCTTCGGCTACCACGCGCCCGAGTACGCGATGACGGGACAGCTTAATCAGAAGAGCGATGTGTACAGTTTCGGAGTCATCCTACTGGAGTTACTGACCGGCAGGAAGCCAGTGGACCATACCATGCCGAAGAGACAGCAG-AGTCTTGTAACCTGGGCGACGCCAAGGTTGAGCG-AGGACAAGGTGAGG-CAGTGCGTGGATCCGAAACTCGGGGATGACTATCCTCCAAAAGCAGTTGCCAAGATGGCGGCGGTAGCGGCGTTGTGCGTGCAATACGAGTCAGATTTCCGGCCGAACATGACCATCGTGGTGAAGGCGCTGCAGCCACTTCTCAGCAAGCCAGCCGGAGCAGGAGGGCCCTAGCAGCACATGCATACTAACACCAGCCCATGCATCAAACCAACTTAGCATCCAAAACACATTATGTGCTCTGTTCTTCTTGGATGCTGAGACTTGTTAAACAGCTGGTGATTGTACCATGTACTACTCACAAATCAATCAAACTGCTAAAAGGGTCCAAGGGCTCACAGAGTTTCAGGTCAAAAACTGTGATTCTCCATTGTTCCTTCAGTCCTTACCTTTGTTTAGGTTTCAGATCAGTAGATATTTTTGCAATTTCGCTGTCCCGTTCTGTAGGTACGTAAGGGTCCATTCCACTGCATGACTGCAAGCTACGTCGTGTTCTTATCTTAAGACATTTATTGACATCACACCGATGGGAGACAAACTGACAACCGAAGGACTGTAGAGAAAATAGGAGGCCTCCTTATCAAAGAGAGAAACATTAATAGAGACAATATCTCAGTGTAGCTGCAGTTTGTGATGACTGTGGCTTGATTGTTCGCATTACGCTGTCAGCTGTTATGGGTTAGTAGTTATAACTTTCTCACTATGAACAGATGATA] [+] EMBL AK111731 [CAAACATTTACGGCTGGCTTGCAATCTTAATCTTTTGCAGTGTTCGTCATTCAGGAGGCTCCCGGCCGATCCGGTGGATCGGATCGGAGCGGGAGCACAAACTGCAAATTGCCACGGTCCTTGCACTTGATTTCCGGAGCCAGGAGGATGATTTGCTGCGGCGGCGAGGAGGAGGAGACGTACGCTCCCCGTGCAGCCAGTCGCAGTCGCAGCAGGCGCCCGACACCTGCGACGCAGTACGATGCAGGCCCTCGTAAGCCAAGAGGACCAAATGCACCCAGGAGCGGCGGCCCGCCACCGAAG GTGCTCTCCATCGACGTGCCAGCCATCTCCATGGGCGAGCTGAACAACATCACCGGACACTTTGGACAGAGTGCCTTGATAGGAGAAGGTTCGTACGGTCGAATCTACAGGGCGGTGCTGACCTCCGGGGAGCCGGTTGCCATAAAAAAGCTTGATCCCAGCGTGTCAAGCGACTCTGAAGCAGACTTCTCTGCTCAGCTGTCAATGGTTTCGAGGCTCAAGAACGAGTATTTCATCCGGCTGATGGGCTACTACCTGGATGCAAACCGAAGAATCCTGGTCTACCAGTTTGCCACGCACGGCTCCCTGCATGACATCCTACACGGGAAGAAGGGCGTGAGGGACGCGGCGCCGGGGCCGGCGCTGAACTGGAGCCAGCGGGTGAAGGTGGCGTACGGCGCCGCGAGAGGGCTCGAGTACCTCCACGAGAAGGCCCAGCCGCCCATCGTCCACCGCGACGTGCGGTCGAGCAACGTTCTCCTCTTCGACGGCTACGAGTCCAAGCTCGCCGACTTCAACCTCACCACCCAGCCTCCCGACGGCGCCGCGCGGTTGCACTCCACCCGCGTCCTCGGAACCTTCGGCTACCACGCGCCCGAGTACGCGATGACGGGACAGCTTAATCAGAAGAGCGATGTGTACAGTTTCGGAGTCATCCTACTGGAGTTACTGACCGGCAGGAAGCCAGTGGACCATACCATGCCGAAGAGACAGCAG AGTCTTGTAACCTGGGCGACGCCAAGGTTGAGCG AGGACAAGGTGAGG CAGTGCGTGGATCCGAAACTCGGGGATGACTATCCTCCAAAAGCAGTTGCCAAGATGGCGGCGGTAGCGGCGTTGTGCGTGCAATACGAGTCAGATTTCCGGCCGAACATGACCATCGTGGTGAAGGCGCTGCAGCCACTTCTCAGCAAGCCAGCCGGAGCAGGAGGGCCCTAGCAGCACATGCATACTAACACCAGCCCATGCATCAAACCAACTTAGCATCCAAAACACATTATGTGCTCTGTTCTTCTTGGATGCTGAGACTTGTTAAACAGCTGGTGATTGTACCATGTACTACTCACAAATCAATCAAACTGCTAAAAGGGTCCAAGGGCTCACAGAGTTTCAGGTCATTGGCTGTGATTCTCCATTGTTCCTTCAGTCCTTACCTTTGTTTAGGTTTCAGATCAGTAGATATTTTTGCAATTTCGCTGTCCCGTTCTGTAGGTACGTAAGGGTCCATTCCACTGCATGACTGCAAGCTACGTCGTGTTCTTATCTTAAGACATTTATTGACATCACACCGATGGGAGACAAACTGACAACCGAAGGACTGTAGAGAAAATAGGAGGCCTCCTTATCAAAGAGAGAAACATTAATAGAGACAATATCTCAGTGTAGCTGCAGTTTGTGATGACTGTGGCTTGATTGTTCGCATTACGCTGTCAGCTGTTATGGGTTAGTAGTTATAACTTTCTCACTATGAACAGATGATA] [+] EMBL C98899 [CAAACATTTACGGCTGGCTTGCAATCTTAATCTTTTGCAGTGTTCGTCATTCAGGAGGCTCCCGGCCGATCCGGTGGATCGGATCGGAGCGGGAGCACAAACTGCAAATTGCCACGGTCCTTGCACTTGATTTCCGGAGCCAGGAGGATGATTTGCTGCGGCGGCGAGGAGGAGGAGACGTACGCTCCCCGTGCAGCCAGTCGCAGTCGCAGCAGGCGCCCGACACCTGCGACGCAGTACAATGCAGGCCCTCGTAAGCCAAGAGGACCAAATGCACCCAGGAGCGGCGGCCCGCCANCGAAGTGTTCT TCCATCGACGTGCCAG ] [+] EMBL AU069773 [CAAACATTTACGGCTGGCTTGCAATCTTAATCTTTTGCAGTGTTCGTCATTCAGGAGGCTCCCGGCCGATCCGGTGGATCGGATCGGAGCGGGAGCACAAACTGCAAATTGCCACGGTCCTTGCACTTGATTTCCGGAGCCAGGAGGATGATTTGCTGCGGCGGCGAGGAGGAGGAGACGTACGCTCCCCGTGCAGCCAGTCGCAGTCGCAGCAGGCGCCCGACACCTGCGACGCATTACAATGCAGGCCCTCGTAAGCCAAGAGGACCAAATGCACCCAGGAGCGGCGGCCCGCCACCGAA GTCTTCTCCATCGACGTGCC ] [+] EMBL C98900 [ aTGGACCNTACCNTCCCGAAGAGACAGCAG AGTCTTGTTACCTGGGCGACGCCCAGGTTGACCGAAGGACAAGGTGAGGCCATTGCGTGGATCCGAAACTCGGGGATGACTATCCTCCAAAAGCAGTTGCCAAGATGGCGGCGGTAGCGGCGTTGTGCGTGCAATACGAGTCAGATTTCCGGCCGAACATGACCATCGTGGTGAAGGCGCTGCAGCCACTTCTCAGCAAGCCAGCCGGAGCAGGAGGGCCCTAGCAGCACATGCATACTAACACCAGCCCATGCATCAAACCAACTTAGCATCCAAAACACATTATGTGCTCTGTTCTTCTTGGATGCTGAGACTTGTTAAACAGCTGGTGATTGTACCATGTACTACTCACAAATCAATCAAACTGCTAAAAGGGTCCAAGGGCTCACAGAGTTTCAGGTCAAAAAaaaaa ] [+] EMBL AU172610 [ ATGCCGAAGAGACAGCAGAAGTCTTGTAACCTGGGCGACGCCAAGGTTGAGCG AGGACAAGGTGAGG CAGTGCGTGGATCCGAAACTCGGGGATGACTATCCTCCAAAAGCAGTTGCCAAGATGGCGGCGGTAACGGCGTTGTGCGTGCAATACGAGTCAGATTTCCGGCCGAACATGACCATCGTGGTGAAGGCGCTGCAGCCACTTCTCAGCAAGCCAGCCGGAGCAGGAGGGCCCTAGCAGCACATGCATACTAACACCAGCCCATGCATCAAACCAACTTAGCATCCAAAACACATTATGTGCTCTGTTCTTCTTGGATGCTGAGACTTGTTAAACAGCTGGTGATTGTACCATGTACTACTCACAAATCAATCAAACTGCTAAAAGGGTCCAAGGGCTCACAGAGTTTCAGGTCAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||