These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 967 fasta sequence [CCCAAAGCAACCG--ACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATT] [+] EMBL AK059809 [CCCAAAGCAACCG ACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATT] [+] EMBL AK104097 [CCCAAAGCAACCGACACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATA ] [+] EMBL CB648568 [ ACACACCCCTTCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCTAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATAT ] [-] EMBL CB648569 [ atGAACCCGTCCAACCGCATGGAGTATTGATGGAAAGTCATCAGCATCCTCAACAAGACATAGTAACCTTGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTTGATTCAATAATATTAGATTGTGTTAAATCTATTGGGTATAAAGTTATTATATTTTAAGATGGAGATACTATTTGGCGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTGCTTGTGTTGTTACATGCGTGGAGTACTATGCA ] consensusID : consensus_8162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CATTTGATGCCCGGGGAGAGGCTCCGCTTCCCGCAAGGGTGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCACAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTATGTATGGTTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTATGTTCCTGAAAAAAAAAA] [+] EMBL BI812502 [CATTTGATGCCCGGGGAGAGGCTCCGCTTCCCGCAAGGGTGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCACAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTATGTATGGTTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTATGTTCCTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8162#0 CCCAAAGCAACCGACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTT 60 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 GTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACG 120 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 GCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGC 180 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCC 240 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTAC 300 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTG 360 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGC 420 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 GGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTC 480 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 CGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGG 540 consensus_8162#1 ----------------------------------------------CATTTGATGCCCGG 14 ****** **** consensus_8162#0 G-AGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTA 599 consensus_8162#1 GGAGAGGCTCCGCTT--CCCGCAAGGGTG-CGACTCGCACTACTTCAAGTTCGGCGTGTA 71 * *********** * ** ********* ****************************** consensus_8162#0 CATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAA 659 consensus_8162#1 CATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCA- 130 *********************************************************** consensus_8162#0 CAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATC 719 consensus_8162#1 CAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATC 190 ********************* ************************************** consensus_8162#0 TAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAG 779 consensus_8162#1 TAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAG 250 ****** ************** ********* **************************** consensus_8162#0 ATGGAGATAGTACTTGGAGTAAATTATAACTGGACATT-GTGTAAACACGCATGTCTCTA 838 consensus_8162#1 ATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTA 310 ************************************** ********************* consensus_8162#0 CTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTC 898 consensus_8162#1 CTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTC 370 ************************************************************ consensus_8162#0 AATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAG 958 consensus_8162#1 AATTATGTATGGT--------------TACGTATATATGATATCTTTGCATTAAGAAAAG 416 **** *** * * ********************************* consensus_8162#0 TACTTAATT--------------------------------------------------- 967 consensus_8162#1 TACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTA 476 ********* consensus_8162#0 ------------------ consensus_8162#1 TGTTCCTGAAAAAAAAAA 494 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||