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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1236 fasta sequence
[TCCACCTTTCCCCAACACGTACCACCAACTCACCGCGTACCAAGCCACCGGCTCAGCAGCAGCAGCTGCCATTTCACAGAGGCATTGGTTGCTGCTCTCTCTTCTTGGCGTTTGTTTCCTATGGAGAGGTGGGCGGCGCCCAAGGTGACGGCTGGTTCGGCGAGGCGGTACGTCGCCGACCAGCCGTCTTTCTCATCCACGCTGCTCGACGCGATATACAAGTCGATGGACGAGCAGCCGGGTCACGGCGGCGGCGCCACCGGGGTGGAGGCGGTGGCTGCGGCGGCCAAGAAGCAGCACGAGGCGGCCCTGCACTATGGGAACTACTACAAGCCGTCGCTCGCGGGGAGCTACCGGGCGCGCGCGCCGGGTCCGCACGCCACGACGTCGAGCTCGTCGGAGTGTTCTAGCTACGGCGGGTTCTCGTCGTCCGAGGCGGAGTCGTCGCACCACCGACGCCTCCGCCCCATCCGCACGACTGTCCCCGGTGGTGCGCCGGGGCCCGCGCCGGAGAAGAAGGCCAAGAAGCCCGGGGCCTCCATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGCCTCGCGGGCTTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCTGGTGTTTTCTAAGGCTGCGTTCGAGCGCGGGAGAAAGAGAGAGATAATTTTGTTTTCCAAACAAAAAAGA]
[+] EMBL AK109502 [TCCACCTTTCCCCAACACGTACCACCAACTCACCGCGTACCAAGCCACCGGCTCAGCAGCAGCAGCTGCCATTTCACAGAGGCATTGGTTGCTGCTCTCTCTTCTTGGCGTTTGTTTCCTATGGAGAGGTGGGCGGCGCCCAAGGTGACGGCTGGTTCGGCGAGGCGGTACGTCGCCGACCAGCCGTCTTTCTCATCCACGCTGCTCGACGCGATATACAAGTCGATGGACGAGCAGCCGGGTCACGGCGGCGGCGCCACCGGGGTGGAGGCGGTGGCTGCGGCGGCCAAGAAGCAGCACGAGGCGGCCCTGCACTATGGGAACTACTACAAGCCGTCGCTCGCGGGGAGCTACCGGGCGCGCGCGCCGGGTCCGCACGCCACGACGTCGAGCTCGTCGGAGTGTTCTAGCTACGGCGGGTTCTCGTCGTCCGAGGCGGAGTCGTCGCACCACCGACGCCTCCGCCCCATCCGCACGACTGTCCCCGGTGGTGCGCCGGGGCCCGCGCCGGAGAAGAAGGCCAAGAAGCCCGGGGCCTCCATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGCCTCGCGGGCTTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCT ]
[-] EMBL CB676393 [ CGGAGAAGAAGGCCAAGAAGCCCGGGGCCTCCATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGCCTCGCGGGCTTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCTGGTGTTTTCTAAGGCTGCGTTCGAGCGCGGGAGAAAGAGAGAGATAATTTTGTTTTCCAAACAAAAAAGA]
[-] EMBL CB658901 [ CGCCTCGCGGGCTTCTTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCTGGTGTTTTTTAAGGCTGCGTTCGAGCGCAGGAGAAAGAGAGAGATNNTTTTG ]
consensusID : consensus_8170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CGCGCCTCGGGGGGTTCCTCAACTCCATCTTGGCCGGCAAGCGCGCGCCGGCCACGCCGCCTTCGGAGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCTGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGAGGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTTGAGAATTTTGCCGCCATTGCTCCCGCCGGGGCTGCGTACCGGGAGGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGATGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTTTGAATATTTTAGAACCAGCCGTCACCTTGGGCGCCGCCCACCTCTCCATAGGAAACAAACGCCAAGAAGAGAGAGCAGCAACCAATGCCTCTGTGAAATGGCAGCTGCTGCTGCTGAGCCGGTGGCTTGGTACGCGGTGAGTTGGTGGT]
[-] EMBL CB676392 [CGCGCCTCGGGGGGTTCCTCAACTCCATCTTGGCCGGCAAGCGCGCGCCGGCCACGCCGCCTTCGGAGACGGCCGGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACGCCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCTGTGGAGGCGGTGCAGCAGATGCTGCTCCAGCGGATGGAGATGGAGAGCGACGAGGAGGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTTGAGAATTTTGCCGCCATTGCTCCCGCCGGGGCTGCGTACCGGGAGGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGATGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTTTGAATATTTTAGAACCAGCCGTCACCTTGGGCGCCGCCCACCTCTCCATAGGAAACAAACGCCAAGAAGAGAGAGCAGCAACCAATGCCTCTGTGAAATGGCAGCTGCTGCTGCTGAGCCGGTGGCTTGGTACGCGGTGAGTTGGTGGT]
consensusID : consensus_8170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[TCGACCCCCCAAGGGGTTGCCCCCTGGAGTCCGGTCCACACATGATCTGCTCCCAACGGGATGGAGATGGAGAGCGACGTAGGACGTACGTACGAGAGTCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGTCCGCCTATTGCTCCCGCCCGGGGCCGCGTACCGGGTACGTAGACTGCCGGTGTATCGAGTACGACCTAGAGTGGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTAACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCTGGTGTTTTCTA]
[+] EMBL BI810577 [TCGACCCCCCAAGGGGTTGCCCCCTGGAGTCCGGTCCACACATGATCTGCTCCCAACGGGATGGAGATGGAGAGCGACGTAGGACGTACGTACGAGAGTCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGTCCGCCTATTGCTCCCGCCCGGGGCCGCGTACCGGGTACGTAGACTGCCGGTGTATCGAGTACGACCTAGAGTGGGCGCTGAACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGAGGGGTAACTGTAAAATGGCGGTGTAGTAACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCTGGTGTTTTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8170#0 TCCACCTTTCCCCAACACGTACCACCAACTCACCGCGTACCAAGCCACCGGCTCAGCAGC 60
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 AGCAGCTGCCATTTCACAGAGGCATTGGTTGCTGCTCTCTCTTCTTGGCGTTTGTTTCCT 120
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 ATGGAGAGGTGGGCGGCGCCCAAGGTGACGGCTGGTTCGGCGAGGCGGTACGTCGCCGAC 180
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 CAGCCGTCTTTCTCATCCACGCTGCTCGACGCGATATACAAGTCGATGGACGAGCAGCCG 240
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 GGTCACGGCGGCGGCGCCACCGGGGTGGAGGCGGTGGCTGCGGCGGCCAAGAAGCAGCAC 300
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 GAGGCGGCCCTGCACTATGGGAACTACTACAAGCCGTCGCTCGCGGGGAGCTACCGGGCG 360
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 CGCGCGCCGGGTCCGCACGCCACGACGTCGAGCTCGTCGGAGTGTTCTAGCTACGGCGGG 420
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 TTCTCGTCGTCCGAGGCGGAGTCGTCGCACCACCGACGCCTCCGCCCCATCCGCACGACT 480
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 GTCCCCGGTGGTGCGCCGGGGCCCGCGCCGGAGAAGAAGGCCAAGAAGCCCGGGGCCTCC 540
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ------------------------------------------------------------
consensus_8170#0 ATACGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCTTCCCCCGGCGCGCGCCTCGCGGGC 600
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 ----------------------------------------------CGCGCCTCGGGGGG 14
consensus_8170#0 TTCCTCAACTCCATCTTCGCCGGCAAGCGCGCGCCGGCCACGCCGCCCTCGGCGACGGCC 660
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 TTCCTCAACTCCATCTTGGCCGGCAAGCGCGCGCCGGCCACGCCGCCTTCGGAGACGGCC 74
consensus_8170#0 GGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACG 720
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 GGGGCGGAGTCCGCGTGCTCGACGGCGTCGTCCTACTCCCGCTCCTGCCTGAGCAAGACG 134
consensus_8170#0 CCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCC 780
consensus_8170#2 ------------------------------------------------------------
consensus_8170#1 CCGTCGACGCGCGGGCAGGCGAAGCGGACCGTGCGGTTCTTGGACAGCGACACGGAGTCC 194
consensus_8170#0 CTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGG--TGCCCG-TGGAGGCGGTGCAGCAG 837
consensus_8170#2 -------------------TCGACCCCCCAAGGGGTTGCCCCCTGGAGTCCGGTCCACAC 41
consensus_8170#1 CTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGG--TGCCTG-TGGAGGCGGTGCAGCAG 251
****** ** **** **** ***** * * * **
consensus_8170#0 ATG--CTGCTCC--AGCGGATGGAGATGGAGAGCGACG-AGGACG-ACG-ACGAGAG-CA 889
consensus_8170#2 ATGATCTGCTCCCAACGGGATGGAGATGGAGAGCGACGTAGGACGTACGTACGAGAGTCA 101
consensus_8170#1 ATG--CTGCTCC--AGCGGATGGAGATGGAGAGCGACG-AGGAGG-ACG-ACGAGAG-CA 303
*** ******* * ********************* **** * *** ******* **
consensus_8170#0 GCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCG-CCGCC-ATTGCTCCCGCC-G 946
consensus_8170#2 GCGACGCGAGCTCCGACCTGTTCGAGCTCGAGAACTTCGTCCGCCTATTGCTCCCGCCCG 161
consensus_8170#1 GCGACGCGAGCTCCGACCTGTTCGAGCTTGAGAATTTTG-CCGCC-ATTGCTCCCGCC-G 360
**************************** ***** ** * ***** ************ *
consensus_8170#0 GGGCCGCGTACCGGG---ACGAGCTGCCGGTGTA-CGAG-ACGACC-AGAGTGG-CGCTG 999
consensus_8170#2 GGGCCGCGTACCGGGTACGTAGACTGCCGGTGTATCGAGTACGACCTAGAGTGGGCGCTG 221
consensus_8170#1 GGGCTGCGTACCGGG---AGGAGCTGCCGGTGTA-CGAG-ACGACC-AGAGTGG-CGATG 413
**** ********** *********** **** ****** ******* ** **
consensus_8170#0 AACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCT 1059
consensus_8170#2 AACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCT 281
consensus_8170#1 AACCGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTTTGAATATTT 473
************************************************** ******* *
consensus_8170#0 TAGTTGGAATCA--ACCGGGCGAGAGGGGTAACTGT---------AAAATGGCGGTGTAG 1108
consensus_8170#2 TAGTTGGAATCA--ACCGGGCGAGAGGGGTAACTGT---------AAAATGGCGGTGTAG 330
consensus_8170#1 TAGAACCAGCCGTCACCTTGGGCGCCGCCCACCTCTCCATAGGAAACAAACGCCAAGAAG 533
*** * * *** * * * * * ** * * ** ** * **
consensus_8170#0 TTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCT-G 1167
consensus_8170#2 TAACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGATCTCT-G 389
consensus_8170#1 AGAGAGCAGCAACCAATGCCTCTGTGAAATGGCAGCTGCTGCTGCTGAGCCGGTGGCTTG 593
* * * * **** * ** ** * * ** * * ** * * ** *
consensus_8170#0 GTGTTTTCTAAGGCTGCGTTCGAGCGCGGGAGAAAGAGAGAGATAATTTTGTTTTCCAAA 1227
consensus_8170#2 GTGTTTTCTA-------------------------------------------------- 399
consensus_8170#1 GTACGCGGTGAGTTGGTGGT---------------------------------------- 613
** *
consensus_8170#0 CAAAAAAGA 1236
consensus_8170#2 ---------
consensus_8170#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||