These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTACATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAACTAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGAGAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAGTGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACGACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATATGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTCCATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCATACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCGCCTTCACATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGGGCCGAACTCAACTGCCCCATTTTTCCCAAACC] [+] EMBL CA759123 [TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTACATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAACTAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGAGAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAGTGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACGACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATATGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTCCATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCATACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCGCCTTCACATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGGGCCGAACTCAACTGCCCCATTTTTCCCAAACC] consensusID : consensus_818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TTTTTTTTTTTTTGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGATACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCAACATCAACATTGATAACATGTGGGAAAAATGATTGTTGAGGAAACCATAGATAAATTGGCCGAACTCAACTGCCCATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCATGTACAATGAAATTGTATGTGCAGCT] [-] EMBL CF314001 [TTTTTTTTTTTTTGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGATACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCAACATCAACATTGATAACATGTGGGAAAAATGATTGTTGAGGAAACCATAGATAAATTGGCCGAACTCAACTGCCCATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCATGTACAATGAAATTGTATGTGCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_818#0 TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTA 60 consensus_818#1 ------------------------------------------------------------ consensus_818#0 CATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAAC 120 consensus_818#1 ------------------------------------------------------------ consensus_818#0 TAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGA 180 consensus_818#1 ------------------------------------------------------------ consensus_818#0 GAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAG 240 consensus_818#1 ------------------------------------------------------------ consensus_818#0 TGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACG 300 consensus_818#1 ------------------------------------------------------------ consensus_818#0 ACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTG 360 consensus_818#1 ------------------------------------------------------------ consensus_818#0 GTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATA 420 consensus_818#1 ------------------------------------------------TTTTTTTTTTTT 12 ** ** * consensus_818#0 TGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTC 480 consensus_818#1 TGAAGGAAACGTGGCCTGGG----GTGGTATAAAC--AAAGAATTGTACAGCTTACAAGT 66 ** * * ** *** * ** *** * ** * ** consensus_818#0 CATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCA 540 consensus_818#1 TACAATCCAGAATT----AAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGA 122 * ** * * ** **************************** ** ****** * consensus_818#0 TACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCG 600 consensus_818#1 TACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCA 182 *********************** ***** *************** **** ******** consensus_818#0 CCTTCA-CATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGG 659 consensus_818#1 ACATCAACATTGATAACATGTGGGAAAAATG-ATTGTTGAGGAAACCATAGATAAATTGG 241 * *** ************* ********** ********************* ****** consensus_818#0 GCCGAACTCAACTGCCCCATTTTTCCCAAACC---------------------------- 691 consensus_818#1 -CCGAACTCAACTGCCC-ATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCAT 299 **************** ************ * consensus_818#0 ------------------------- consensus_818#1 GTACAATGAAATTGTATGTGCAGCT 324 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||