cluster # 8185

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Oryza sativa
cluster # 8185 cluster # 8185 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8185#0 length = 742 sequences # 4

consensus_8185#1 length = 191 sequences # 1

consensusID : consensus_8185#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 742
fasta sequence

                              [AGCCATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGTTGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTCTGCTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGGCTCCTCCCT-GGACACGCTGGAGTACGT-CATCTCCGTCGGGCTCGGCACGCCGGCCGTGACGCAGACGGTGACCATCGACACCGGCAGCGACGTGTCGTGGGTGCAGTGCAACCCGTGCCCCAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCACCTACAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGGCTGCGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCACCAACGGCACGTACAGCCGCGACACGCTGACGCTGTCCGGCGCCTCCGACGCCGTGAAGGGATTCCAGTTCGGGTGCAGCCACGTC]

[+] EMBL CB644347             [AGCCATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGTTGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTCTGCTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGGCTCCTCCCT GGACACGCTGGAGTACGT CATCTCCGTCGGGCTCGGCACGCCGGCCGTGACGCAGACGGTGACCATCGACACCGGCAGCAACGTGTCGTGGGTGCAGTGCAACCCGTGCCCCAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCACCTACAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGGCTGCGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCACCAACGGCACGTACAGCCGCAACACGCTGACGCTGTCCGGCGCCTCCGACGCCGTGAAGGGATTCCAGTTCGGGTGCAGCCACGTC]
[+] EMBL CB647127             [   CATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGTTGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTCTGCTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGGCTCCTCCCT GGACACGCTGGAGTACGT CATCTCCGTCGGGCTCGGCACGCCGGCCGTGACGCAGACGGTGACCATCGACACCGGCAGCGACGTGTCGTGGGTGCAGTGCAACCCGTGCCCCAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCACCTACAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGGCTGCGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCACCAACGGCACGTACAGCCGCGACACGCTGACGCTGTCCGGCGCCTCCGACGCCGTGAAGGGATTCCAGTTCGGGTGCAGCCACGTC]
[+] EMBL CB646754             [   CATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGTTGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTCTGCTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGGCTCCTCCCT GGACACGCTGGAGTACGT CATCTCCGTCGGGCTCGGCACGCCGGCCGTGACGCAGACGGTGACCATCGACACCGGCAGCGACGTGTCGTGGGTGCAGTGCAACCCGTGCCCCAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCACCTACAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGGCTGCGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCACCAACGGCACGTACAGCCGCGACACGCTGACGCTGTCCGGCGCCT                                         ]
[+] EMBL OSR32561A            [                                                                                        AAGGTTCTTGAGCTGAATTCTGAGGCCGTCTGCTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGNCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGGCTCCTCCCTGGGACACGNTGGAGTACGTNAATCTNCGTNGGGNTTGGAACGCCGGCCGTNACGGAGA                                                                                                                                                                                                                                                                                                                             ]




>consensus_8185#0
AGCCATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGT
TGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTCTG
CTCCGAGCGAAATGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCG
GCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCT
CAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGCCGT
CGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCTGGG
CTCCTCCCTGGACACGCTGGAGTACGTCATCTCCGTCGGGCTCGGCACGCCGGCCGTGAC
GCAGACGGTGACCATCGACACCGGCAGCGACGTGTCGTGGGTGCAGTGCAACCCGTGCCC
CAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCACCTA
CAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGGCTG
CGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCACCAA
CGGCACGTACAGCCGCGACACGCTGACGCTGTCCGGCGCCTCCGACGCCGTGAAGGGATT
CCAGTTCGGGTGCAGCCACGTC

consensusID : consensus_8185#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence

                              [TTTTTCAGTGAAATTGTAATCGTTTTGGTGCGTCAAATTTTGCAGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGGCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAG]

[+] EMBL OSR00681A            [TTTTTCAGTGAAATTGTAATCGTTTTGGTGCGTCAAATTTTGCAGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGGCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAG]




>consensus_8185#1
TTTTTCAGTGAAATTGTAATCGTTTTGGTGCGTCAAATTTTGCAGCGATTTCGTCGTCGT
TGAGTGGAACCACGGTGGCGTTGAACCACCGGCACGGGCCATGCTCGGCGGTGCCGTCGT
CCAAGAAGAGGCCGACCGAAGAGGAGCTGCTCAAACGCGACCAGCTCCGAGCCGAGCACA
TCCAGCGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8185#0      AGCCATGGCTTCTGTTTCGCCGCTACTGCTTCTCCTCTTGTGCAGCTACCACTCTGTAGT 60
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      TGCTCATGCAGGAGATGGACAGAGTTACAAGGTTCTTGAGCTGAATTCTGAGGCCGTC-- 118
consensus_8185#1      --------------------------------TTTTTCAGTGAAATTGTAATCGTTTTGG 28
                                                      ** ** **   **** * *     *   

consensus_8185#0      TGCTCCGAGCGAAAT-GCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCA 177
consensus_8185#1      TGCGTCAAATTTTGCAGCGATTTCGTCGTCGTTGAGTGGAACCACGGTGGCGTTGAACCA 88
                      ***  * *        ********************************************

consensus_8185#0      CCGGCACGGGCCATGCTCGCCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCT 237
consensus_8185#1      CCGGCACGGGCCATGCTCGGCGGTGCCGTCGTCCAAGAAGAGGCCGACCGAAGAGGAGCT 148
                      ******************* ****************************************

consensus_8185#0      GCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAGTTCGCCATGAACGCCGC 297
consensus_8185#1      GCTCAAACGCGACCAGCTCCGAGCCGAGCACATCCAGCGGAAG----------------- 191
                      *******************************************                 

consensus_8185#0      CGTCGATGGCGCCGGCGATCTCCAGCAGTCGAAGGTGTCGTCGTCCGTGCCGACCAAGCT 357
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      GGGCTCCTCCCTGGACACGCTGGAGTACGTCATCTCCGTCGGGCTCGGCACGCCGGCCGT 417
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      GACGCAGACGGTGACCATCGACACCGGCAGCGACGTGTCGTGGGTGCAGTGCAACCCGTG 477
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      CCCCAACCCGCCGTGCTACGCGCAGACGGGCGCGCTGTTCGACCCCGCCAAGTCGAGCAC 537
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      CTACAGGGCGGTCTCCTGCGCCGCCGCCGAGTGCGCGCAGCTCGAGCAGCAAGGCAACGG 597
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      CTGCGGCGCCACCAACTACGAGTGCCAGTACGGCGTCCAGTACGGCGACGGCTCGACCAC 657
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      CAACGGCACGTACAGCCGCGACACGCTGACGCTGTCCGGCGCCTCCGACGCCGTGAAGGG 717
consensus_8185#1      ------------------------------------------------------------
                                                                                  

consensus_8185#0      ATTCCAGTTCGGGTGCAGCCACGTC 742
consensus_8185#1      -------------------------