These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1917 fasta sequence [CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTCATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAACCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC-TGCTCCACTT-AAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACA-TTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTA-GTCATTATGGTATCAAGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATA-AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT-GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA-GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT-AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG-TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC-TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCATTGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCAGGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCGTACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAGTTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAAA] [+] EMBL AK101391 [CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTCATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAACCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC TGCTCCACTT AAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACA TTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTA GTCATTATGGTATCAAGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATA AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAA ] [+] EMBL BM419202 [ cCAGCAATTGTCCGGGCTCCACTTGAAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACACTTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTATGTCATTATGGTATCAAGGTTTCGC AAACCTAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATANAACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAACNTTCNTTGTTTGATCCAAaaaaaaaa ] [+] EMBL BI806804 [ TGACACATATTCACTTCATTTTTCATGCCATA AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGC AAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAAaa ] [+] EMBL BQ908463 [ GTCAACGTTTTGAACATTATAATGGTCAAGGATGGT AAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTACGGTTATAGAGCATAGGGTTATGTGCCTCGAGTCATGAATATCCGGAGGTTTATGCAACTTTGACCGC AAATGTGGTTTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCATTGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCAGGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCGTACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAGTTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAAA] consensusID : consensus_8190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence [CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC] [+] EMBL AK111120 [CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8190#0 ----CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCT 56 consensus_8190#1 CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCT 60 ******************************************************** consensus_8190#0 CCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCG 116 consensus_8190#1 CCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCG 120 ************************************************************ consensus_8190#0 CCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATC 176 consensus_8190#1 CCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATC 180 ************************************************************ consensus_8190#0 GACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCAC 236 consensus_8190#1 GACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCAC 240 ************************************************************ consensus_8190#0 CGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTC 296 consensus_8190#1 CGGTGGGTGCCGTCGTCCTCCG-------------------------------------- 262 ********************** consensus_8190#0 ATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAA 356 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 CCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTG 416 consensus_8190#1 ---------------------TTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTG 301 *************************************** consensus_8190#0 TTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGG 476 consensus_8190#1 TTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGG 361 ************************************************************ consensus_8190#0 TGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTG 536 consensus_8190#1 TGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTG 421 ************************************************************ consensus_8190#0 GTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCG 596 consensus_8190#1 GTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCG 481 ************************************************************ consensus_8190#0 AGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTG 656 consensus_8190#1 AGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTG 541 ************************************************************ consensus_8190#0 CGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGAC 716 consensus_8190#1 CGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGAC 601 ************************************************************ consensus_8190#0 CAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAAT 776 consensus_8190#1 CAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAAT 661 ************************************************ *********** consensus_8190#0 GATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCG 836 consensus_8190#1 GATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCG 721 ************************************************************ consensus_8190#0 CATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGC 896 consensus_8190#1 CATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGC 781 ************************************************************ consensus_8190#0 TGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAA 956 consensus_8190#1 TGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAA 841 ************************************************************ consensus_8190#0 TCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATG 1016 consensus_8190#1 TCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATG 901 ************************************************************ consensus_8190#0 CTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCCTGCTCCACTTAAAT 1076 consensus_8190#1 CTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC-------------- 947 ********************************************** consensus_8190#0 ATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACATTCTGTGTTTTGTGGTCTTA 1136 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 ATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTAGTCATTATGGTATCA 1196 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 AGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATAT 1256 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 TCACTTCATTTTTCATGCCATAAACCACTATGTATTGTTCAAATGTTGGTTACTTGATCA 1316 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTATGTCAAGGATGGTAAAATTA 1376 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTAGGTTATAGAGCATAGGGTTAT 1436 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GTGCCTCGAGTCATAATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGGTTTTTT 1496 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATT 1556 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GTCAATCATAAACTTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCG 1616 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 TCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCAT 1676 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 TGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCA 1736 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 GGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCG 1796 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 TACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAG 1856 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 TTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAA 1916 consensus_8190#1 ------------------------------------------------------------ consensus_8190#0 A 1917 consensus_8190#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||