cluster # 8198

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Oryza sativa
cluster # 8198 cluster # 8198 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8198#0 length = 1043 sequences # 4

consensus_8198#1 length = 763 sequences # 1

consensusID : consensus_8198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1043
fasta sequence

                              [GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCGAGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC-AGAAGAGGCCGCATTC-TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA-CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATATCTTTAAACTATATAGTTATTAATAGTTAAAGTTT]

[+] EMBL AK071441             [GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCGAGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTT                                                                                                                   ]
[+] EMBL AK070236             [                                                            AGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGACGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGGTATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATATCTTTAAACTATATAGTTATTAATAGTTAAAGTTT]
[-] EMBL CB627307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTG                                             ]
[+] EMBL AU029474             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGATCCCGTTGCTGCTGCAAGAAGAGGCCGCATTCTTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTAaaaaaaaa                                                                                                                                      ]




>consensus_8198#0
GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCG
AGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACA
CGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCG
TCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGG
TGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCG
ACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCT
CCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCT
GGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATC
GTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCAC
TGAATGATGCACGATTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGG
CCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAA
GTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGG
CTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTA
TCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAAT
GAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGT
ACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACG
TGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATATCTTTAAACTAT
ATAGTTATTAATAGTTAAAGTTT

consensusID : consensus_8198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 763
fasta sequence

                              [AGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATAAAAAAAATTTATGGA]

[-] EMBL CB629552             [AGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATAAAAAAAATTTATGGA]




>consensus_8198#1
AGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGC
TTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGA
ACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACT
AAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTA
TGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGAT
GATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTT
GGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCA
TCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTC
TGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTC
TTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTC
TTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCC
ATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTAAG
GGACTAATCTATACATTGTGTTCTAATAAAAAAAATTTATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8198#0      GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCG 60
consensus_8198#1      ------------------------------------------------------------
                                                                                  

consensus_8198#0      AGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACA 120
consensus_8198#1      ------------------------------------------------------------
                                                                                  

consensus_8198#0      CGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCG 180
consensus_8198#1      ------------------------------------------------------------
                                                                                  

consensus_8198#0      TCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGG 240
consensus_8198#1      ------------------------------------------------------------
                                                                                  

consensus_8198#0      TGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCG 300
consensus_8198#1      -------------------------AGGGGGCAGAAAG--AAAGGTAGAAGG---GGGTA 30
                                                ***  **    *     *** ***     * *  

consensus_8198#0      ACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCT 360
consensus_8198#1      ATGTGTGGTAGAG-ATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCG-GTAGAGAT 88
                      *  *     ** *  *      * *   **    **  *  ***   **** ** *   *

consensus_8198#0      CCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCT 420
consensus_8198#1      TTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAA 148
                         *    *   *  *    *   **   *  *   ** ***  **   ****  *    

consensus_8198#0      GGTGTGGAGAGGTCCGTGA-TGTTAT----TTACACTGACAATGGGAAAGTGACAGTGAT 475
consensus_8198#1      AGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCC 208
                       ***        **   *  ** ***     ** * ***        **   *   **  

consensus_8198#0      ATATCGTGTC-ACAGTACGAGGAACAG----ATGGAG--AGGTTCATAGGGAGGCAGCTG 528
consensus_8198#1      TTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTG 268
                       *    ***      ** * * *        *****   *********************

consensus_8198#0      GAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCG 588
consensus_8198#1      GAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCG 328
                      ************************* **********************************

consensus_8198#0      CATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGA 648
consensus_8198#1      CATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGA 388
                      ************************************************************

consensus_8198#0      CTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATT 708
consensus_8198#1      CTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATT 448
                      ********************************* **************************

consensus_8198#0      TGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCA 768
consensus_8198#1      TGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCA 508
                      ************************************************************

consensus_8198#0      GGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAG 828
consensus_8198#1      GGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAG 568
                      ************************************************************

consensus_8198#0      ATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGC 888
consensus_8198#1      ATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGC 628
                      ************************************************************

consensus_8198#0      AAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACA 948
consensus_8198#1      AAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACA 688
                      ************************************************************

consensus_8198#0      CGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATA 1008
consensus_8198#1      CGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATA 748
                      *****************************    ***************************

consensus_8198#0      TCTTTAAACTATATAGTTATTAATAGTTAAAGTTT 1043
consensus_8198#1      AAAAAAATTTATGGA-------------------- 763
                           **  ***  *