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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1942 fasta sequence
[ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCCACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCAAGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTGCGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCAGGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGACATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGGCGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGCTACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAGCTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTGATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCTTTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTCTTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCACTTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAGTTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTCTCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAATGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAATTGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTGGCGACAATATGGTTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCAGTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGCAACTTTTGGATATTTTCTGTGAGGCTGTAAACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGAGAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCCAGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAAGATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCAGTACAGACAGTGTGAGGATCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCACTGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGAAATTTCTGGTCTCTGTTGAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCTTTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTTAAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCAATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATATCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCTCCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGGTTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGAAGGCCAGATCTTGTGCAGAGAATCGCATT]
[+] EMBL AB100408 [ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCCACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCAAGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTGCGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCAGGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGACATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGGCGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGCTACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAGCTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTGATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCTTTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTCTTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCACTTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAGTTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTCTCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAATGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAATTGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTGGCGACAATATGGTTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCAGTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGCAACTTTTGGATATTTTCTGTGAGGCTGTAAACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGAGAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCCAGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAAGATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCAGTACAGACAGTGTGAGGATCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCACTGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGAAATTTCTGGTCTCTGTTGAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCTTTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTTAAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCAATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATATCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCTCCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGGTTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGAAGGCCAGATCTTGTGCAGAGAATCGCATT]
consensusID : consensus_820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[GCCGCTATTGAAGGGCACTCGTATGGATTGTTAGTGCGTCAGAATTCACATACTCGAATTACAAAAATTACAAGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACTGACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTCATAAATTCCAAATGGGCAACGGTAGCTGCTTCATTTTGTCAACCGAATATCAAGTTTCCAGCCGTCGTTGGGGTTTCTGAATAATCCATATTTCCTCCATTTGCACGATAACATCATATAAACTCACATGCCATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCATCACAAGTCTGAAAAACACTGGTTTGCAGTTGGTAAACTAGCGTTGAAGGTCTCAAAGGCCGAATGCGATTCTCTGCACAAGATCTGGCCTTCTCTTGCT]
[+] EMBL AU225451 [GCCGCTATTGAAGGGCACTCGTATGGATTGTTAGTGCGTCAGAATTCACATACTCGAATTACAAAAATTACAAGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACTGACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTCATAAATTCCAAATGGGCAACGGTAGCTGCTTCATTTTGTCAACCGAATATCAAGTTTCCAGCCGTCGTTGGGGTTTCTGAATAATCCATATTTCCTCCATTTGCACGATAACATCATATAAACTCACATGCCATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCATCACAAGTCTGAAAAACACTGGTTTGCAGTTGGTAAACTAGCGTTGAAGGTCTCAAAGGCCGAATGCGATTCTCTGCACAAGATCTGGCCTTCTCTTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_820#0 ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCC 60
consensus_820#1 ------------------------------------------------------------
consensus_820#0 ACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCA 120
consensus_820#1 ------------------------------------------------------------
consensus_820#0 AGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTG 180
consensus_820#1 ------------------------------------------------------------
consensus_820#0 CGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCA 240
consensus_820#1 ------------------------------------------------------------
consensus_820#0 GGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGA 300
consensus_820#1 ------------------------------------------------------------
consensus_820#0 CATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGG 360
consensus_820#1 ------------------------------------------------------------
consensus_820#0 CGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGC 420
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAG 480
consensus_820#1 ------------------------------------------------------------
consensus_820#0 CTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTG 540
consensus_820#1 ------------------------------------------------------------
consensus_820#0 ATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCT 600
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTC 660
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCAC 720
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAG 780
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTC 840
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAA 900
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAAT 960
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTG 1020
consensus_820#1 --------------------------------------------GCCGCTATTGAAG--G 14
* * * * * *
consensus_820#0 GCGACAATATGG-TTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCA 1079
consensus_820#1 GCACTCGTATGGATTGTTAGTGCGTCAGAATTCAC--ATACTCGAATTACAAAAATTACA 72
** ***** *** * *** ** * * *** ** ** * * **
consensus_820#0 GTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGC---AACTTTTGGATATT 1136
consensus_820#1 AGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACT 132
* ** * * * ** * * * *** * * * ** * * * ** *
consensus_820#0 TTCTGTGAGGCTGTAA-ACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGA 1195
consensus_820#1 GACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTC--ATAAATTC 190
*** ** * ** ** * ** * * * * * ** ** ** ****
consensus_820#0 GAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCC 1255
consensus_820#1 CAAATGGGCAAC-GGTAGCTGCTTCAT---TTTGTCAACCGA-ATATCAAGTTTCCAGCC 245
** * * *** **** * ** ** * * * ** * * *** * ** **
consensus_820#0 AGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAA 1315
consensus_820#1 GTCGTTGGGGTTTCTGAATAATCCATA--TTT----CCTCCATTTGCACGATAACATCAT 299
* * * * ** * * *** * ***** * *** * *
consensus_820#0 GATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCA-GTACAGACAGTGTGAGGA 1374
consensus_820#1 ATAAACTCACATGCC--ATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCA 357
*** *** * * * * * * ** * ** ** ** ** * ****** *
consensus_820#0 TCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCAC 1434
consensus_820#1 TCACAA----------GTCTGAAAAAC-----ACTGGT-TTGCAGTTGGTAAACTAGCGT 401
****** * ** * * * * ** ** * * *** * ****
consensus_820#0 TGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGA-AATTTCTGGTCTCTGTT 1493
consensus_820#1 TGAAGGTCTCAAAGGCC--------GAATGCGATTCTCTGCACAAGATCTGGCCTTCTCT 453
**** * * *** * *** ** * * * ** ***** ** *
consensus_820#0 GAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCT 1553
consensus_820#1 TGCT-------------------------------------------------------- 457
*
consensus_820#0 TTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTT 1613
consensus_820#1 ------------------------------------------------------------
consensus_820#0 AAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCA 1673
consensus_820#1 ------------------------------------------------------------
consensus_820#0 ATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATA 1733
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCT 1793
consensus_820#1 ------------------------------------------------------------
consensus_820#0 CCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGG 1853
consensus_820#1 ------------------------------------------------------------
consensus_820#0 TTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGA 1913
consensus_820#1 ------------------------------------------------------------
consensus_820#0 AGGCCAGATCTTGTGCAGAGAATCGCATT 1942
consensus_820#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||